Run macbroad only for chip (#53)

* fix: add gather back to frip rule, using different wild card

* fix: move macBroad uropa outputs under chipseq switch

workflow/Snakefile

@@ -147,6 +147,12 @@ elif assay in ["atac", "chip"]:
             rule_all_ins.extend(expand(join(ppqt_dir, "{name}.{ext}.ppqt"), name=samples, ext=tag_ext))
             rule_all_ins.extend(expand(join(ppqt_dir, "{name}.{ext}.pdf"), name=samples, ext=tag_ext))
             rule_all_ins.extend(expand(join(ppqt_dir, "{name}.{ext}.ppqt.txt"), name=samples, ext=tag_ext))
+        rule_all_ins.extend(expand(
+            join(uropa_dir, "{application}", "{name}_uropa_{_type}_allhits.txt"), 
+            name=chips,
+            application=["macsBroad"],
+            _type=peak_types,
+        ))
     elif assay == "atac":
         rule_all_ins.extend(expand(
             join(genrich_dir, "{name}", "{name}.narrowPeak"), name=chips
@@ -180,7 +186,7 @@ if has_inputs:
 rule_all_ins.extend(expand(
     join(uropa_dir, "{application}", "{name}_uropa_{_type}_allhits.txt"), 
     name=chips,
-    application=["macsNarrow", "macsBroad"],
+    application=["macsNarrow"],
     _type=peak_types,
 ))