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Kraken and Peakcallers for single-end data (#24)
* updating kraken rule to work with single and paired end data * updating MACS2_narrow rule to work with single end data * removing print statements * updating MACS2_broad rule wot work with single-end data * updating SICER rule to work with single-end data * fixing spaces in trim rule * SICER to have -egf effectivesize/ genomelen fraction instead of default 0.75 * fix to kraken rule in params * updating path to mm10.blacklist * fix for SICER rule * fixing param.frac iin Sicer rule
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