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Fixes #2638 cannot export HI to snapshot
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| using OSPSuite.Core.Domain; | ||
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| namespace PKSim.Core.Snapshots; | ||
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| public class DiseaseState : IWithName | ||
| { | ||
| /// <summary> | ||
| /// Name of disease state associated with OriginData | ||
| /// </summary> | ||
| public string Name { get; set; } | ||
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| /// <summary> | ||
| /// List of disease state parameters associated with the selected disease state | ||
| /// </summary> | ||
| public Parameter[] Parameters { get; set; } | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,112 @@ | ||
| using System.Linq; | ||
| using System.Threading.Tasks; | ||
| using OSPSuite.Core.Domain; | ||
| using OSPSuite.Core.Domain.UnitSystem; | ||
| using OSPSuite.Utility.Extensions; | ||
| using PKSim.Assets; | ||
| using PKSim.Core.Model; | ||
| using PKSim.Core.Repositories; | ||
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| namespace PKSim.Core.Snapshots.Mappers; | ||
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| using ModelOriginData = Model.OriginData; | ||
| using SnapshotDiseaseState = DiseaseState; | ||
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| public class DiseaseStateContext : SnapshotContext | ||
| { | ||
| public ModelOriginData OriginData { get; } | ||
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| public DiseaseStateContext(ModelOriginData originData, SnapshotContext baseContext) : base(baseContext) | ||
| { | ||
| OriginData = originData; | ||
| } | ||
| } | ||
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| public class DiseaseStateMapper : SnapshotMapperBase<ModelOriginData, SnapshotDiseaseState, DiseaseStateContext> | ||
| { | ||
| private readonly IDiseaseStateRepository _diseaseStateRepository; | ||
| private readonly ParameterMapper _parameterMapper; | ||
| private readonly IDimensionRepository _dimensionRepository; | ||
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| public DiseaseStateMapper( | ||
| IDiseaseStateRepository diseaseStateRepository, | ||
| ParameterMapper parameterMapper, | ||
| IDimensionRepository dimensionRepository | ||
| ) | ||
| { | ||
| _parameterMapper = parameterMapper; | ||
| _dimensionRepository = dimensionRepository; | ||
| _diseaseStateRepository = diseaseStateRepository; | ||
| } | ||
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| public override Task<SnapshotDiseaseState> MapToSnapshot(ModelOriginData originData) | ||
| { | ||
| var diseaseState = originData?.DiseaseState; | ||
| if (diseaseState == null || diseaseState.IsHealthy) | ||
| return Task.FromResult<SnapshotDiseaseState>(null); | ||
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| var snapshot = new SnapshotDiseaseState | ||
| { | ||
| Name = diseaseState.Name, | ||
| }; | ||
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| if (originData.DiseaseStateParameters.Any()) | ||
| snapshot.Parameters = originData.DiseaseStateParameters.Select(namedParameterFrom).ToArray(); | ||
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| return Task.FromResult(snapshot); | ||
| } | ||
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| public override Task<ModelOriginData> MapToModel(SnapshotDiseaseState diseaseStateSnapshot, DiseaseStateContext diseaseStateContext) | ||
| { | ||
| var originData = diseaseStateContext.OriginData; | ||
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| if (diseaseStateSnapshot == null) | ||
| return Task.FromResult(originData); | ||
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| var diseaseState = _diseaseStateRepository.AllFor(originData.Population).FindByName(diseaseStateSnapshot.Name); | ||
| if (diseaseState == null) | ||
| throw new PKSimException(PKSimConstants.Error.CannotFindDiseaseState(diseaseStateSnapshot.Name, originData.Population.DisplayName)); | ||
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| originData.DiseaseState = diseaseState; | ||
| diseaseState.Parameters.Each(x => | ||
| { | ||
| var diseaseStateParameter = new OriginDataParameter {Name = x.Name, Value = x.Value, Unit = x.DisplayUnitName()}; | ||
| var snapshotParameter = diseaseStateSnapshot.Parameters.FindByName(x.Name); | ||
| if (snapshotParameter != null) | ||
| { | ||
| diseaseStateParameter.Value = baseParameterValueFrom(snapshotParameter, x.Value); | ||
| diseaseStateParameter.Unit = snapshotParameter.Unit; | ||
| } | ||
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| originData.AddDiseaseStateParameter(diseaseStateParameter); | ||
| }); | ||
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| return Task.FromResult(originData); | ||
| } | ||
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| private Parameter namedParameterFrom(OriginDataParameter parameter) | ||
| { | ||
| return parameterFrom(parameter, _dimensionRepository.DimensionForUnit(parameter.Unit)).WithName(parameter.Name); | ||
| } | ||
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| private Parameter parameterFrom(OriginDataParameter parameter, IDimension dimension) | ||
| { | ||
| if (parameter == null) | ||
| return null; | ||
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| return _parameterMapper.ParameterFrom(parameter.Value, parameter.Unit, dimension); | ||
| } | ||
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| private double baseParameterValueFrom(Parameter snapshot, double defaultValueInBaseUnit) => | ||
| baseParameterValueFrom(snapshot, _dimensionRepository.DimensionForUnit(snapshot.Unit), defaultValueInBaseUnit); | ||
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| private double baseParameterValueFrom(Parameter snapshot, IDimension dimension, double defaultValueInBaseUnit) | ||
| { | ||
| if (snapshot?.Value == null) | ||
| return defaultValueInBaseUnit; | ||
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| var unit = dimension.Unit(ModelValueFor(snapshot.Unit)); | ||
| return dimension.UnitValueToBaseUnitValue(unit, snapshot.Value.Value); | ||
| } | ||
| } |
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