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Fix obs data comparison plots (#9)
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* Fixes #7 Fix invalid observed data references

* sync

---------

Co-authored-by: Yuri05 <Yuri05@github.com>
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Yuri05 and Yuri05 authored Apr 17, 2023
1 parent 6f1af25 commit 1ac65ab
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13 changes: 13 additions & 0 deletions .github/workflows/Check_utf8.yml
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name: Check if all required files are UTF-8

on:
[push, pull_request]

permissions:
contents: read

jobs:
utf8check:
uses: Open-Systems-Pharmacology/Workflows/.github/workflows/UTF8Check.yml@main
with:
file-extensions: 'R\|json\|md'
12 changes: 12 additions & 0 deletions .github/workflows/CrossRefCheckWithAnchors.yml
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name: CrossRefCheck with Anchors

on:
push:
branches:
- review

jobs:
crossref-check-with-anchors:
uses: Open-Systems-Pharmacology/Workflows/.github/workflows/MarkdownCrossrefCheck_withAnchors.yml@main
with:
folder-path: 'Evaluation/report'
12 changes: 0 additions & 12 deletions .github/workflows/XRefCheck.yml
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1 change: 0 additions & 1 deletion .github/workflows/wordlist.txt
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nda
30 changes: 15 additions & 15 deletions Evaluation/Input/evaluation_plan.json
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Expand Up @@ -541,7 +541,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 2.5 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "664 - Komoroski 2009 - MAD 2.5 mg (day 1) - Dapagliflozin - PO - 2.5 mg - Plasma - agg. (n=6)",
"ObservedData": "Komoroski 2009 - MAD 2.5 mg (day 1) - Dapagliflozin - PO - 2.5 mg - Plasma - agg. (n=6)",
"Caption": "2.5 mg",
"Color": "#FF0000",
"Symbol": "Triangle",
Expand All @@ -552,7 +552,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 10 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "665 - Komoroski 2009 - MAD 10 mg (day 1) - Dapagliflozin - PO - 10 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 10 mg (day 1) - Dapagliflozin - PO - 10 mg - Plasma - agg. (n=6)",
"Caption": "10 mg",
"Color": "#FF0000",
"Symbol": "Circle",
Expand All @@ -563,7 +563,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 20 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "666 - Komoroski 2009 - MAD 20 mg (day 1) - Dapagliflozin - PO - 20 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 20 mg (day 1) - Dapagliflozin - PO - 20 mg - Plasma - agg. (n=6)",
"Caption": "20 mg",
"Color": "#FF0000",
"Symbol": "Cross",
Expand All @@ -574,7 +574,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 50 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "667 - Komoroski 2009 - MAD 50 mg (day 1) - Dapagliflozin - PO - 50 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 50 mg (day 1) - Dapagliflozin - PO - 50 mg - Plasma - agg. (n=6)",
"Caption": "50 mg",
"Color": "#FF0000",
"Symbol": "Diamond",
Expand All @@ -585,7 +585,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 100 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "668 - Komoroski 2009 - MAD 100 mg (day 1) - Dapagliflozin - PO - 100 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 100 mg (day 1) - Dapagliflozin - PO - 100 mg - Plasma - agg. (n=6)",
"Caption": "100 mg",
"Color": "#FF0000",
"Symbol": "Square",
Expand All @@ -604,7 +604,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 2.5 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "664 - Komoroski 2009 - MAD 2.5 mg (day 7 and day 14) - Dapagliflozin - PO - 2.5 mg - Plasma - agg. (n=6)",
"ObservedData": "Komoroski 2009 - MAD 2.5 mg (day 7 and day 14) - Dapagliflozin - PO - 2.5 mg - Plasma - agg. (n=6)",
"Caption": "2.5 mg",
"Color": "#FF0000",
"Symbol": "Triangle",
Expand All @@ -615,7 +615,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 10 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "665 - Komoroski 2009 - MAD 10 mg (day 7 and day 14) - Dapagliflozin - PO - 10 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 10 mg (day 7 and day 14) - Dapagliflozin - PO - 10 mg - Plasma - agg. (n=6)",
"Caption": "10 mg",
"Color": "#FF0000",
"Symbol": "Circle",
Expand All @@ -626,7 +626,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 20 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "666 - Komoroski 2009 - MAD 20 mg (day 7 and day 14) - Dapagliflozin - PO - 20 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 20 mg (day 7 and day 14) - Dapagliflozin - PO - 20 mg - Plasma - agg. (n=6)",
"Caption": "20 mg",
"Color": "#FF0000",
"Symbol": "Cross",
Expand All @@ -637,7 +637,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 50 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "667 - Komoroski 2009 - MAD 50 mg (day 7 and day 14) - Dapagliflozin - PO - 50 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 50 mg (day 7 and day 14) - Dapagliflozin - PO - 50 mg - Plasma - agg. (n=6)",
"Caption": "50 mg",
"Color": "#FF0000",
"Symbol": "Diamond",
Expand All @@ -648,7 +648,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 100 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "668 - Komoroski 2009 - MAD 100 mg (day 7 and day 14) - Dapagliflozin - PO - 100 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 100 mg (day 7 and day 14) - Dapagliflozin - PO - 100 mg - Plasma - agg. (n=6)",
"Caption": "100 mg",
"Color": "#FF0000",
"Symbol": "Square",
Expand All @@ -667,7 +667,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 2.5 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "664 - Komoroski 2009 - MAD 2.5 mg (day 7 and day 14) - Dapagliflozin - PO - 2.5 mg - Plasma - agg. (n=6)",
"ObservedData": "Komoroski 2009 - MAD 2.5 mg (day 7 and day 14) - Dapagliflozin - PO - 2.5 mg - Plasma - agg. (n=6)",
"Caption": "2.5 mg",
"Color": "#FF0000",
"Symbol": "Triangle",
Expand All @@ -678,7 +678,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 10 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "665 - Komoroski 2009 - MAD 10 mg (day 7 and day 14) - Dapagliflozin - PO - 10 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 10 mg (day 7 and day 14) - Dapagliflozin - PO - 10 mg - Plasma - agg. (n=6)",
"Caption": "10 mg",
"Color": "#FF0000",
"Symbol": "Circle",
Expand All @@ -689,7 +689,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 20 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "666 - Komoroski 2009 - MAD 20 mg (day 7 and day 14) - Dapagliflozin - PO - 20 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 20 mg (day 7 and day 14) - Dapagliflozin - PO - 20 mg - Plasma - agg. (n=6)",
"Caption": "20 mg",
"Color": "#FF0000",
"Symbol": "Cross",
Expand All @@ -700,7 +700,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 50 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "667 - Komoroski 2009 - MAD 50 mg (day 7 and day 14) - Dapagliflozin - PO - 50 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 50 mg (day 7 and day 14) - Dapagliflozin - PO - 50 mg - Plasma - agg. (n=6)",
"Caption": "50 mg",
"Color": "#FF0000",
"Symbol": "Diamond",
Expand All @@ -711,7 +711,7 @@
"Project": "Dapagliflozin",
"Simulation": "PO MD 100 mg (perm)",
"Output": "Organism|PeripheralVenousBlood|Dapagliflozin|Plasma (Peripheral Venous Blood)",
"ObservedData": "668 - Komoroski 2009 - MAD 100 mg (day 7 and day 14) - Dapagliflozin - PO - 100 mg - Plasma - agg. (n=6).json",
"ObservedData": "Komoroski 2009 - MAD 100 mg (day 7 and day 14) - Dapagliflozin - PO - 100 mg - Plasma - agg. (n=6)",
"Caption": "100 mg",
"Color": "#FF0000",
"Symbol": "Square",
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