Update linting ignores, apply automatic fixes (reviewed)

.markdownlint.yml

@@ -8,30 +8,13 @@ fix: true
 MD041: false # first-line-h1
 
 # Errors from .html to .md rename (first step in HTML to Markdown conversion)
-MD001: false # heading-increment
-MD003: false # heading-style
-MD004: false # ul-style
-MD007: false # ul-indent
-MD009: false # no-trailing-spaces
-MD010: false # no-hard-tabs
-MD011: false # no-reversed-links
-MD012: false # no-multiple-blanks
-MD013: false # line-length
-MD018: false # no-missing-space-atx
-MD019: false # no-multiple-space-atx
-MD020: false # no-missing-space-closed-atx
-MD022: false # blanks-around-headings
-MD023: false # heading-start-left
-MD024: false # no-duplicate-heading
-MD026: false # no-trailing-punctuation
-MD029: false # ol-prefix
-MD032: false # blanks-around-lists
-MD033: false # no-inline-html
-MD034: false # no-bare-urls
-MD037: false # no-space-in-emphasis
-MD045: false # no-alt-text
-MD049: false # emphasis-style
-MD052: false # reference-links-images
-MD055: false # table-pipe-style
-MD058: false # blanks-around-tables
+no-duplicate-heading: false
+heading-increment: false
+no-inline-html: false
+no-alt-text: false
+line-length: false
 # The block above this is to be eventually removed.
+
+no-emphasis-as-heading: false
+link-fragments: false
+no-space-in-links: false

.pre-commit-config.yaml

@@ -9,6 +9,7 @@ repos:
         exclude: |
           (?x)^(
                 configure$|
+                .*\.md$|
                 .*\.ascii$|
                 .*\.asc$|
                 .*\.ref$|

db/db.describe/db.describe.md

@@ -34,6 +34,7 @@ Column 2: OBJECTID:INTEGER:11
 Column 3: AREA:DOUBLE PRECISION:20
 [...]
 ```
+
 ```sh
 db.describe table=hospitals database='$GISDBASE/$LOCATION_NAME/PERMANENT/dbf/' \
             driver=dbf
@@ -66,6 +67,7 @@ type:INTEGER
 ```sh
 db.describe table=hospitals format=json
 ```
+
 ```sh
 {
     "table": "hospitals",

display/d.graph/d.graph.md

@@ -132,7 +132,7 @@ A dynamic example can be found in the *d.polar* shell script.
 echo "symbol basic/star 20 2264417 5413182 black red" | d.graph -m
 ```
 
-### Split the screen into quadrants:
+### Split the screen into quadrants
 
 ```sh
 d.frame -s full_screen

display/d.linegraph/d.linegraph.md

@@ -84,6 +84,7 @@ use of underscores is not recommended and there is no need to use it at
 all in the GUI or when using *d.linegraph* in Python scripts.
 
 The way the program locates and labels tic marks is less than perfect:  
+
 1) although distances between Y tics are proportional to the value, they
 are not proportional on the X axis;  
 2) decimal values between -1 and 1 can be printed on the X axis, but not

display/d.text/d.text.md

@@ -9,7 +9,7 @@ angle, and boldness can be adjusted with commands in the standard input
 and then assigns values to these options on lines within the standard
 input).
 
-### Commands:
+### Commands
 
 **.C** *color*  
 (where *color* is one of the available colors) causes text appearing on

general/g.list/g.list.md

@@ -208,5 +208,5 @@ of their region.
 ## AUTHOR
 
 Huidae Cho  
-grass4u@gmail.com  
+<grass4u@gmail.com>  
 based on general/manage/cmd/list.c by Michael Shapiro

general/g.parser/g.parser.md

@@ -9,7 +9,7 @@
 **g.parser** \[-**s**\] \[-**t**\] \[-**n**\] *filename*
 \[*argument*,...\]
 
-### Flags:
+### Flags
 
 **-t**  
 Print strings for translation

general/g.region/g.region.md

@@ -99,7 +99,7 @@ specified. Flag **-o** was added in GRASS GIS version 8 to simulate
 *g.region* behavior in prior versions when current region file was
 always updated unless **-u** was specified.
 
-### Additional parameter information:
+### Additional parameter information
 
 **zoom=***name*  
 Shrink current region settings to the smallest region encompassing all
@@ -340,6 +340,7 @@ coordinate reference system since it is reprojected on the fly.
 ```sh
 g.region -p format=json
 ```
+
 ```sh
 {
     "projection": "99 (Lambert Conformal Conic)",
@@ -368,9 +369,11 @@ g.region -p format=json
     "cells3": 2526500
 }
 ```
+
 ```sh
 g.region -l format=json
 ```
+
 ```sh
 {
     "nw_long": -78.688888505507336,

general/g.remove/g.remove.md

@@ -34,4 +34,4 @@ g.remove -f type=vector pattern="stream_*" exclude="*_final"
 ## AUTHOR
 
 Huidae Cho  
-grass4u@gmail.com
+<grass4u@gmail.com>

gui/wxpython/animation/g.gui.animation.md

@@ -36,11 +36,9 @@ follow these steps:
 - choose parameter (parameter of *[m.nviz.image](m.nviz.image.md)*) to
   animate (e.g. color_map)
 
-
 <img src="wxGUI_animation_tool.jpg" data-border="1"
 alt="Animation Tool screenshot" />  
 
-
 ## NOTE
 
 The Animation Tool follows the computational region settings, so please

gui/wxpython/docs/wxGUI.iscatt.md

@@ -26,11 +26,9 @@ interactivity, which allows user to:
 
 ## TOOL CONTROLS LAYOUT
 
-
 <img src="wxGUI_iscatt.jpg" data-border="1"
 alt="Interactive Scatter Plot Tool" />  
 
-
 If editing mode is activated (the green polygon tool in toolbar), the
 areas which were selected in the scatter plots are highlighted. In the
 image you can see this area for scatter plot of bands `B_6, B_7` inside

gui/wxpython/docs/wxGUI.md

@@ -30,7 +30,6 @@ menu bar with a set of pull-down menus for all GRASS GIS functions
 (analysis, file I/O, GIS configuration and management); on a Mac, the
 GRASS functions menu is at the top of the screen.
 
-
 <img src="wxGUI_layer_manager.png" data-border="1" alt="screenshot" />  
 
 Figure: Layer Manager screenshot on Ubuntu
@@ -241,7 +240,6 @@ from the window, a map canvas where a map composition of one or more
 layers is displayed, and a statusbar with information about the
 geographic region of the maps displayed.
 
-
 ![Map Display Window](wxGUI_map_display.jpg)  
 
 Figure: Map Display screenshot on Ubuntu

gui/wxpython/docs/wxGUI.nviz.md

@@ -37,10 +37,8 @@ display mode.
 
 ## 3D View Toolbar
 
-
 <img src="wxGUI_nviz_toolbar.jpg" data-border="1" alt="toolbar" />  
 
-
 ![icon](icons/script-save.png)  *Generate command for m.nviz.image*  
 Generate command for m.nviz.image based on current state.
 
@@ -80,10 +78,8 @@ panel (following label *Look:*):
 - *top* moves the current eye position above the map center.
 - *reset* returns all current view settings to their default values.
 
-
 <img src="wxGUI_nviz_tools_view.jpg" data-border="1" alt="toolbox" />  
 
-
 You can adjust the viewer's height above the scene, perspective and
 twist value to rotate the scene about the horizontal axis. An angle of 0
 is flat. The scene rotates between -90 and 90 degrees.
@@ -162,10 +158,8 @@ In the very bottom part of the panel position of surface can be set. To
 move the surface right (looking from the south) choose *X* axis and set
 some positive value. To reset the surface position press *Reset* button.
 
-
 <img src="wxGUI_nviz_tools_surface.jpg" data-border="1" alt="toolbox" />  
 
-
 #### Constant surface
 
 It is possible to add constant surface and set its properties like fine
@@ -208,10 +202,8 @@ Currently are implemented these markers:
 Thematic mapping can be used to determine marker color and size (and
 line color and width).
 
-
 <img src="wxGUI_nviz_tools_vector.jpg" data-border="1" alt="toolbox" />  
 
-
 #### 3D rasters
 
 3D raster maps (volumes, voxel models) can be displayed either as
@@ -253,10 +245,8 @@ attributes.
 
 3D rasters can be moved the same way like surfaces do.
 
-
 <img src="wxGUI_nviz_tools_volume.jpg" data-border="1" alt="toolbox" />  
 
-
 ### Analysis
 
 *Analysis* tab contains *Cutting planes* panel.
@@ -289,10 +279,8 @@ light color, brightness and ambient. Light position is controlled
 similarly to eye position. If option *Show light model* is enabled light
 model is displayed to visualize the light settings.
 
-
 <img src="wxGUI_nviz_tools_light.jpg" data-border="1" alt="toolbox" />  
 
-
 The *Fringe* panel allows you to draw fringes in different directions
 (North & East, South & East, South & West, North & West). It is possible
 to set the fringe color and height of the bottom edge.

gui/wxpython/docs/wxGUI.toolboxes.md

@@ -177,11 +177,9 @@ If we have `user-toolboxes-list` tag in the `main_menu.xml` file, our
 custom toolbox will be listed in the automatically added *Toolboxes*
 main menu item. The screenshot shows the resulting menu:
 
-
 <img src="wxGUI_toolboxes.jpg" data-border="0"
 alt="Toolboxes - menu customization" />  
 
-
 ## NOTES
 
 After the first start of wxGUI with custom toolboxes, `.grass/toolboxes`

gui/wxpython/gcp/g.gui.gcp.md

@@ -27,10 +27,8 @@ The GCP Manager is structured into three panels:
 
 ### Components of the GCP Manager
 
-
 <img src="wxGUI_gcp_frame.jpg" data-border="0" alt="GCP Manager" />  
 
-
 *Toolbars*
 
 Two toolbars are provided with the GCP Manager, one for managing the map
@@ -114,7 +112,6 @@ display region extents (both size and location of area displayed).
 Source and target display are adjusted by using the current GCPs for
 coordinate transformation:  
 
-
 *Adjust source display to target display*  
 The extents of the source display are adjusted to the current extents of
 the target display.
@@ -140,11 +137,9 @@ canvas (source or target).
 ![icon](icons/settings.png)  *Settings*  
 Shows a settings dialog for GCP management and display:  
 
-
 *Symbology*  
 Settings for map and GCP display:  
 
-
 *Highlight highest RMS error only*  
 Only the GCP with the highest RMS error will be displayed in a different
 colour, both in the list of GCPs and the GCP Map Display.
@@ -185,11 +180,9 @@ Select a source map for the left pane of the GCP Map Display.
 *Select target map to display*  
 Select a target map for the right pane of the GCP Map Display.
 
-
 *Rectification*  
 Settings for georectification:  
 
-
 *Select rectification method*  
 Set the polynomial order for georectification. This order will also be
 used for RMS error calculation.
@@ -202,8 +195,6 @@ project when georectifying.
 Change the extension for output map names when doing the actual
 georectification.
 
-
-
 ![icon](icons/help.png)  *Show Help*  
 Show help page for the GCP Manager.
 

gui/wxpython/gmodeler/g.gui.gmodeler.md

@@ -197,8 +197,6 @@ window with *Save* and *Run* option are shown in the figures below.
 [<img src="g_gui_gmodeler_model_avg.png" width="600" height="272" />](g_gui_gmodeler_model_avg.png)  
 *Figure: A model to perform average statistics for zipcode zones.*
 
-
-
 [<img src="g_gui_gmodeler_items.png" width="600" height="330" />](g_gui_gmodeler_items.png)
 
 [<img src="g_gui_gmodeler_python.png" width="600" height="330" />](g_gui_gmodeler_python.png)  
@@ -255,8 +253,6 @@ set in the module dialog as input called `%raster`.
 [<img src="g_gui_gmodeler_variables.png" width="600" height="330" />](g_gui_gmodeler_variables.png)  
 *Figure: Example of raster file variable settings.*
 
-
-
 [<img src="g_gui_gmodeler_variables_raster.png" width="600"
 height="257" />](g_gui_gmodeler_variables_raster.png)  
 *Figure: Example of raster file variable usage.*

gui/wxpython/iclass/g.gui.iclass.md

@@ -28,11 +28,9 @@ supervised classification* or via command line as *g.gui.iclass*.
 - import vector map
 - export vector map with attribute table
 
-
 <img src="iclass_frame.jpg" data-border="1"
 alt="Supervised Classification Tool" />  
 
-
 *wxIClass* performs the first pass in the GRASS two-pass supervised
 image classification process; the GRASS module *[i.maxlik](i.maxlik.md)*
 executes the second pass. Both programs must be run to generate a

gui/wxpython/image2target/g.gui.image2target.md

@@ -27,10 +27,8 @@ The GCP Manager is structured into three panels:
 
 ### Components of the GCP Manager
 
-
 <img src="wxGUI_gcp_frame.jpg" data-border="0" alt="GCP Manager" />  
 
-
 *Toolbars*
 
 Two toolbars are provided with the GCP Manager, one for managing the map
@@ -114,7 +112,6 @@ display region extents (both size and location of area displayed).
 Source and target display are adjusted by using the current GCPs for
 coordinate transformation:  
 
-
 *Adjust source display to target display*  
 The extents of the source display are adjusted to the current extents of
 the target display.
@@ -140,11 +137,9 @@ canvas (source or target).
 ![icon](icons/settings.png)  *Settings*  
 Shows a settings dialog for GCP management and display:  
 
-
 *Symbology*  
 Settings for map and GCP display:  
 
-
 *Highlight highest RMS error only*  
 Only the GCP with the highest RMS error will be displayed in a different
 colour, both in the list of GCPs and the GCP Map Display.
@@ -185,11 +180,9 @@ Select a source map for the left pane of the GCP Map Display.
 *Select target map to display*  
 Select a target map for the right pane of the GCP Map Display.
 
-
 *Rectification*  
 Settings for georectification:  
 
-
 *Select rectification method*  
 Set the polynomial order for georectification. This order will also be
 used for RMS error calculation.
@@ -202,8 +195,6 @@ project when georectifying.
 Change the extension for output map names when doing the actual
 georectification.
 
-
-
 ![icon](icons/help.png)  *Show Help*  
 Show help page for the GCP Manager.