clean up. Final commit of v1.

src/edu/uct/ibr/IBR.java

@@ -39,6 +39,12 @@ public static void main(String[] args) {
   }  
 
   public static void help(){
-    System.out.println("There will be some help info here at some point");
+    System.out.println(" ~~ IBRJ ~~\n"+
+        "The ./ibr script can be run with two flags:\n"+
+        "* -cli to run the program in CLI mode\n"+
+        "* -gui to run the program in GUI mode\n"+
+        "Alternatively, run the program with no flags\n"+
+        "and enter 'g' to run the GUI or 'c' to run \n"+
+        "the CLI.");
   }
 }

src/edu/uct/ibr/cli/IBRCLI.java

@@ -88,12 +88,7 @@ else if (userInput.equals("q") || userInput.equals("quit")){
    * Load a graph from a given input file
    */
   private static void load(){
-    String userInput = io.input(message.INPUT_FILE_PATH);
-
-    //NOTE: The following is for ease of use during development
-    String filePath = "";
-    if (userInput.equals("a")) filePath = "./examples/asia/asia.bif";
-    else filePath = userInput;
+    String filePath = io.input(message.INPUT_FILE_PATH);
 
     try{
       graph = new BNGraph(filePath);

src/edu/uct/ibr/util/message.java

@@ -36,8 +36,12 @@ public class message{
   public static final String INPUT_IMPLICATION_TYPE = "(c)lassical or (d)efeasible implication?";
   public static final String INPUT_OBSERVED_VALUE = "Enter observed value";
   public static final String CLI_OBSERVATION_TYPE ="(l)ogical or (p)robabilistic observation?";
-  public static final String GUI_HELP = "Click \"Load Network\" to load a network\n click draw inference to draw inference";
   public static final String OUTPUT_FILE_PATH = "Enter the output file name";
+  public static final String GUI_HELP = ""+
+        "Use the top panel buttons to perform actions on the network.\n"+
+        "The right side panels show information about the network such\n"+
+        "as implications added and observations made.\n"+
+        "Network nodes can be moved by clicking and dragging them.";
   /**
    * Get the menu instruction text
    */