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sharoncy authored Dec 16, 2024
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**How to cite the reference atlases**

**Allen Mouse Brain Atlas Common Coordinate Framework version 3** (RRID:JCR_020999 and RRID:JRC_021000):
**Allen Mouse Brain Atlas Common Coordinate Framework version 3**:

* Wang Q, Ding SL, Li Y, Royall J, Feng D, Lesnar P, Graddis N, Naeemi M, Facer B, Ho A, Dolbeare T, Blanchard B, Dee N, Wakeman W, Hirokawa KE, Szafer A, Sunkin SM, Oh SW, Bernard A, Phillips JW, Hawrylycz M, Koch C, Zeng H, Harris JA, Ng L. The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. 2020 May 14;181(4):936-953.e20. doi: 10.1016/j.cell.2020.04.007.
* Wang et al. (2020). The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell.

See the `citation policy <https://alleninstitute.org/citation-policy/>`_ from the Allen Intitute for more information.

**Waxholm Space atlas of the Sprague Dawley rat brain version 2 , 3 and 4** (RRID:SCR_017124):
**Waxholm Space atlas of the Sprague Dawley rat brain version 2 , 3 and 4:**

Please refer to the atlas using RRID:SCR_017124, specify the atlas version(s) used, and cite the most recent publication:

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For reuse of the Waxholm Space atlas of the Sprague Dawley rat brain, see the `citation policy. <https://www.nitrc.org/citation/?group_id=1081>`_

**Developmental Mouse Brain Atlas**

We encourage researchers who use DeMBA to cite both the dataset and publication presenting DeMBA, and to specify the age of any template(s) used and the version of any segmentation(s) used.

• Article: Carey et al. (2024) DeMBA: a developmental atlas for navigating the mouse brain in space and time. bioRxiv. https://doi.org/10.1101/2024.06.14.598876
• Dataset: Carey et al. (2024). Developmental mouse brain atlas (DeMBA) with continuous coverage of postnatal day 4 to 56 (v1) [Data set]. EBRAINS. https://doi.org/10.25493/PWDG-536
• Allen CCFv3 segmentations: Wang et al. (2020). The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas. Cell. https://doi.org/10.1016/j.cell.2020.04.007
• KimLabDev segmentations: Kronman et al. (2024). Developmental mouse brain common coordinate framework. Nature Communications. https://doi.org/10.1038/s41467-024-53254-w



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