Code

Bump test coverage to 20%#418

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kedhammar merged 43 commits intoNationalGenomicsInfrastructure:masterNationalGenomicsInfrastructure/TACA:masterfrom kedhammar:testskedhammar/TACA:testsCopy head branch name to clipboardMar 4, 2024

+150,563-976

Commits

Commits on Nov 7, 2023

• Set up a dockerfile that can run tests

  alneberg

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• Changed command for running tests in readme

  alneberg

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Commits on Dec 4, 2023

• Added gitlens to devcontainer

  alneberg

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• Updated dockerfile

  alneberg

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• Updated minimal test config to match removal of port

  alneberg

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• Updated test_utils to make tests pass

  alneberg

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Commits on Dec 11, 2023

• New rsync command and samplesheet location for miseq

  alneberg

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• Update in flowcellparser to replace NaN with 0

  alneberg

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• CopyComplete needed in test data as well to indicate sequencing done

  alneberg

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• Update to send mail signature

  alneberg

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• Updates to how demultiplexing is called

  alneberg

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• Add copycomplete to hiseqX as well

  alneberg

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• Moved samplesheet location

  alneberg

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Commits on Dec 12, 2023

• Stderr output from bcl2fastq for testing

  alneberg

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• Broadly updating tests

  alneberg

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Commits on Dec 20, 2023

• Started fixing the ONT tests

  alneberg

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Commits on Feb 12, 2024

• Merge remote-tracking branch 'alneberg/container' into tests

  kedhammar

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• improve docs, add debugging

  kedhammar

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• try reorganizing tests dir structure

  kedhammar

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• more reorganizing ._.

  kedhammar

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• segregate old and new tests

  kedhammar

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• clarify names

  kedhammar

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• expand testing fixture

  kedhammar

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• start working on illumina tests

  kedhammar

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• reset file to Johannes latest

  kedhammar

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• annotate source code

  kedhammar

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• wip

  kedhammar

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• try adding test RunParameters.xml

  kedhammar

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• set up run parameter parsing

  kedhammar

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Commits on Feb 13, 2024

• overwrite dir if it exists

  kedhammar

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• add NovaSeqXPlus samplesheets dir

  kedhammar

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• improve docs, put run ss in external dir

  kedhammar

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• add indexes

  kedhammar

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• fix docs

  kedhammar

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Commits on Feb 29, 2024

• IT'S ALIVE

  kedhammar

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• formatting

  kedhammar

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• bump versionlog

  kedhammar

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• don't lint old tests, underscore unused variable

  kedhammar

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• fix prettier errors

  kedhammar

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• only use pipreqs to check requirements of taca, not tests

  kedhammar

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• rm sphinx-rtd-theme from reqs, already in dev-reqs

  kedhammar

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• fix typo

  kedhammar

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• remove accidentally duplicated dir

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