Code

Archiving cleanup#2621

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WalterKolczynski-NOAA merged 169 commits intoNOAA-EMC:developNOAA-EMC/global-workflow:developfrom DavidHuber-NOAA:feature/archive_cleanupDavidHuber-NOAA/global-workflow:feature/archive_cleanupCopy head branch name to clipboardJun 1, 2024

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Commits

Commits on Mar 7, 2024

• Initial set of archiving yamls.

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Commits on Mar 12, 2024

• rework gdas.yaml to Jinja template

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• Restart with a blank slate; rename gdas.yaml.

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Commits on Mar 15, 2024

• Create archive task class with initial gdas.yaml.j2

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• Create configure method

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Commits on Mar 23, 2024

• Updates to archive task.

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Commits on Apr 1, 2024

• Add htar features to archive task, update gdas template. (untested)

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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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Commits on Apr 4, 2024

• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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Commits on Apr 8, 2024

• Update archive protocol function, add templates.

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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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Commits on Apr 9, 2024

• Archive protocol overhaul.

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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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• Update snowda archiving to match develop.

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• Address PEP8 issues.

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• Add gdasocean_analysis template

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Commits on Apr 11, 2024

• Add local (ARCDIR) archiving to archive.py.

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• Fix PEP8 errors.

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Commits on Apr 12, 2024

• Let archive.py handle tracker pslot renaming.

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Commits on Apr 15, 2024

• Rewrite archive job to use exglobal_archive.py.

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Commits on Apr 17, 2024

• Enabled GFS archiving and reworked some features

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• Update wxflow hash.

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Commits on Apr 18, 2024

• Add enkf archiving.

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• Remove now-defunct hpssarch_gen.sh.

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• Address PEP8 warnings

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• Fix additional PEP8 warnings

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Commits on Apr 19, 2024

• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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• Fixes for snow DA archiving.

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• Remove unused fhmin.

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• Better explicitize enkf archiving

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Commits on Apr 22, 2024

• Further explicitize archiving templates.

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• Small fix for snow DA archiving.

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• Fix TC genesis arcdir archiving.

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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  ddd1397

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• Fix pgrb2b analysis filename

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• Fix cyclone tracker filenames.

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Commits on Apr 23, 2024

• Move forecast hours and restart intervals to config.base.

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  a81ee42

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• Archive all sfcf* files.

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• Refactor restart/forecast hour-based archiving

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• Add TODOs for GDAS component archiving

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  1c24f6b

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• Explicitly archive gfs_collective files

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• More explicitly archive gridded GFS Wave products

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• Add optional wave station products to archives

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• Fix restart intervals in archiving templates.

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Commits on Apr 24, 2024

• Address shellcheck suggestion

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• Fix enkf_grp optional file declarations.

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• Move verfrad warning files to optional list

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• Fix restart_interval loop control.

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• Copy relevant changes to gefs config files.

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• Remove amsua files from archive list

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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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Commits on Apr 25, 2024

• Fix wave FHMAX for GEFS.

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• Added untested enkfgfs warning to archive.py

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• Merge branch 'feature/archive_yaml' of github.com:DavidHuber-NOAA/global-workflow into feature/archive_yaml

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• Remove debug print statement

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• Remove 'untested' warning

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• Corrected genesis COM path

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• Remove unsaved atm_stoch files

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• Move restart_interval* to more logical locations

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• Remove unused gfs_restartb template

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Commits on Apr 30, 2024

• Add master template outline.

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• Adjust earc groups by resolution

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• Fix template constants in jinja

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• Rename save_restart variables.

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• Fix atardir datasets

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  committed
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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  committed
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Commits on May 1, 2024

• Update wxflow/jinja

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  committed
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• Fix iaufhrs typo

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  committed
  18c1271

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• Fix timedelta typo

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  committed
  c99c8f4

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• Apply fixes to master templates

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  committed
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• Fix dataset parsing

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• Add FATAL ERROR to fatal error messages

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• Fix whitespace

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Commits on May 2, 2024

• Update gdas component head names

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  committed
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• Flat-layer the master templates, fix wave archiving

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  committed
  4fa45b3

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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  committed
  90a00e7

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• Correct CICE namelist.

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  committed
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• Add quick fix for wgrib.

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Commits on May 3, 2024

• Replace bash templates in Jinja templates.

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  committed
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• First attempt at reenabling aerosols

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  committed
  32010d0

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• Fix snow diag tarring

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  committed
  356be5e

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• Fix build_all comment

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  committed
  930d013

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• Fix cice restart variable name

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  committed
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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  committed
  cfb73fe

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• Transfer gfs config fixes to gefs configs

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  committed
  b79e481

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• Fix gdas_tasks

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  committed
  43d1aed

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• Fix aerosol comment

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  committed
  23d6563

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• Turn aerosol analyses on for gfs and gdas runs

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  committed
  fa45977

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• Use aero cdump variables to determine archiving

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  committed
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• Replace waves with aerosols in config.fcst

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  committed
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• Change mandatory to required

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• Make wave point files required

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Commits on May 6, 2024

• Add wave IBP data

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  committed
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• Split archive execute method, determine commands (htar/tar, chmod, etc) in configure method

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  committed
  d471e9e

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• Remove unused numpy, timedelta modules

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  committed
  196db3e

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• Split enkfgdas and enkfgfs master templates; create one tarball at a time.

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  committed
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Commits on May 8, 2024

• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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• Handle indention at the master level

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  committed
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Commits on May 9, 2024

• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  committed
  4969af8

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• Consolidated enkf heads to master template

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  committed
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• Set PYTHONPATH to head of ush/python

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  committed
  8f8ed43

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• Clean up archive.py

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  committed
  be28de1

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• Fix ocean archiving

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  committed
  aaa3876

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• Removed unused COM, updated gdasocean template

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  committed
  48578f7

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• Explicitized gdasocean_analysis template

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  committed
  e450662

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• Clean up some of the templates

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  committed
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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  committed
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Commits on May 10, 2024

• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  committed
  d72f9b4

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• Do not archive ocean analysis on the first cycle

  DavidHuber-NOAA

  committed
  2e3b461

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• Fix restart copies in forecast_postdet.sh

  DavidHuber-NOAA

  committed
  4e9ecc0

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• Add archive support for jedi ATM; fix reset time offsets when DOIAU=NO

  DavidHuber-NOAA

  committed
  c945de4

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• Reverted restart offset for enkf (does not change with IAU)

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  committed
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Commits on May 13, 2024

• Add missing variables

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  committed
  af7c968

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• Fix VFYARC archiving

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  committed
  5543214

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• Fix offsets for ENKF IAU

  DavidHuber-NOAA

  committed
  4436a91

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• Fix ocean/ice GDAS products

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  committed
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• Wrap optional files in appropriate flags

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  committed
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• Use RUN instead of CDUMP for aerosols.

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• Added an 1152 case for earc

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  committed
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• Replace CDUMP with RUN for wave, aerosol configs

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  committed
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• Move WGRIB def to module_base

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  committed
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• Added missing ;;.

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  committed
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Commits on May 14, 2024

• Fix IAUFHRS

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  committed
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• Make gsistat mandatory; remove duplicate flux files

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  committed
  f27839c

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• Fix ocean time step to archive

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  committed
  6e74ce8

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• Add missing ice IC file to archive.

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  committed
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• Add missing ocean CSVs.

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  committed
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• Archive *gdas hourly outputs at 3-hour intervals

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  committed
  7dd2fd4

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• Add missing keys and fix bugs

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  committed
  a9fa4e3

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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  committed
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Commits on May 16, 2024

• Flesh out enkf restarts.

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  committed
  c2b981c

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• Key enkf atmf netcdf files off of IAUFHRS_ENKF

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  committed
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• Add missing logs and inc file to enkf*.tar

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  committed
  8f2d4af

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• Make atma files optional, correct log name

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  committed
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• Add sfcanl data files to gdas restart tarballs

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  committed
  f08c2b8

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• Move misplaced endif

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  committed
  cfd5fbb

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• Add iaufhrs_enkf definition

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  committed
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• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  committed
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Commits on May 17, 2024

• Updating nc check script to verify time dimensions

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  committed
  7e205e7

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• Ignore shellcheck warning

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  committed
  478a5ba

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• Fixed ncfile variable name

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  committed
  3be3bd5

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• Do not try to collect ecen, esfc logs on first cycle

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  committed
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• Move staticmethod for compatability with older Python versions

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  committed
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Commits on May 20, 2024

• Merge remote-tracking branch 'emc/develop' into feature/archive_yaml

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  committed
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Commits on May 21, 2024

• Separate stmp/ptmp for orion and hercules.

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  committed
  5aeccac

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• Do not run arch/earc on half cycles

  DavidHuber-NOAA

  committed
  898cc5e

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• Reorganize enkf templates; add comments; fix increment/analysis archiving

  DavidHuber-NOAA

  committed
  c49567c

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• Reorganize gdas archiving; add ensres data; add comments

  DavidHuber-NOAA

  committed
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• Reorganize GFS archiving; add comments

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  committed
  4496a96

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• Comment arcdir archiving

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  committed
  5d5c529

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• Add ice archiving comment

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  committed
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Commits on May 22, 2024

• Merge remote-tracking branch 'emc/develop' into feature/archive_cleanup

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  committed
  b25c523

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• Fixed bugs

  DavidHuber-NOAA

  committed
  75c9e61

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• Require all jinja2 archive template variables be defined

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  committed
  e58824a

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• Address shellcheck warning

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  committed
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Commits on May 23, 2024

• Correct FHMAX_FITS

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  committed
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• Reformat arcdir.yaml.j2 to remove logic

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  committed
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• Moved fatal checks to the top of archive.py

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  committed
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• Moved file renaming so it can be sent to arcdir.

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  committed
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Commits on May 24, 2024

• Merge branch 'sandbox/arcdir_reformat' into feature/archive_cleanup

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  committed
  0b02dbd

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• Fix typo

  DavidHuber-NOAA

  committed
  c48b3f0

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• Copy to arcdir in one step

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  committed
  5481da4

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• Add minimal logic into arcdir yaml to avoid undefined math

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  committed
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• Grab whatever stats CSVs there are

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  committed
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• Merge remote-tracking branch 'emc/develop' into feature/archive_cleanup

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  committed
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Commits on May 29, 2024

• Merge remote-tracking branch 'emc/develop' into feature/archive_cleanup

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  committed
  d87bd93

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• Condense conditionals

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  committed
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• Add documentation to _construct_arcdir_set

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  committed
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Commits on May 31, 2024

• Merge branch 'develop' into feature/archive_cleanup

  WalterKolczynski-NOAA

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