deploy: 04e67fd

NL-BioImaging · Dec 19, 2023 · be1c9cc · be1c9cc
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diff --git a/_modules/index.html b/_modules/index.html
@@ -38,7 +38,7 @@
   </form>
 </div>
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
-              <p class="caption" role="heading"><span class="caption-text">Get Started</span></p>
+              <p class="caption" role="heading"><span class="caption-text">BIOMERO - Get Started</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../readme_link.html">BIOMERO - the OMERO Slurm Client library</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../readme_link.html#overview">Overview</a></li>

diff --git a/_modules/omero_slurm_client/slurm_client.html b/_modules/omero_slurm_client/slurm_client.html
diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt
@@ -3,7 +3,7 @@
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
-Welcome to Omero Slurm Client's documentation!
+Welcome to BIOMERO's documentation!
 ==============================================
 
 
@@ -12,7 +12,7 @@ Welcome to Omero Slurm Client's documentation!
 ***********************
 
 .. toctree::
-   :caption: Get Started
+   :caption: BIOMERO - Get Started
    :maxdepth: 4
 
    readme_link

diff --git a/genindex.html b/genindex.html
@@ -38,7 +38,7 @@
   </form>
 </div>
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
-              <p class="caption" role="heading"><span class="caption-text">Get Started</span></p>
+              <p class="caption" role="heading"><span class="caption-text">BIOMERO - Get Started</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="readme_link.html">BIOMERO - the OMERO Slurm Client library</a></li>
 <li class="toctree-l1"><a class="reference internal" href="readme_link.html#overview">Overview</a></li>
@@ -191,10 +191,6 @@ <h2 id="G">G</h2>
 
 <h2 id="I">I</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
-  <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="omero_slurm_client.html#omero_slurm_client.slurm_client.SlurmClient.init_slurm">init_slurm (omero_slurm_client.slurm_client.SlurmClient attribute)</a>
-</li>
-  </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="omero_slurm_client.html#omero_slurm_client.slurm_client.SlurmClient.init_workflows">init_workflows() (omero_slurm_client.slurm_client.SlurmClient method)</a>
 </li>
@@ -252,14 +248,10 @@ <h2 id="P">P</h2>
 <h2 id="R">R</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="omero_slurm_client.html#omero_slurm_client.slurm_client.SlurmClient.resubmit_job">resubmit_job() (omero_slurm_client.slurm_client.SlurmClient method)</a>
-</li>
-      <li><a href="omero_slurm_client.html#omero_slurm_client.slurm_client.SlurmClient.run_cellpose">run_cellpose() (omero_slurm_client.slurm_client.SlurmClient method)</a>
+      <li><a href="omero_slurm_client.html#omero_slurm_client.slurm_client.SlurmClient.run_commands">run_commands() (omero_slurm_client.slurm_client.SlurmClient method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="omero_slurm_client.html#omero_slurm_client.slurm_client.SlurmClient.run_commands">run_commands() (omero_slurm_client.slurm_client.SlurmClient method)</a>
-</li>
       <li><a href="omero_slurm_client.html#omero_slurm_client.slurm_client.SlurmClient.run_commands_split_out">run_commands_split_out() (omero_slurm_client.slurm_client.SlurmClient method)</a>
 </li>
       <li><a href="omero_slurm_client.html#omero_slurm_client.slurm_client.SlurmClient.run_workflow">run_workflow() (omero_slurm_client.slurm_client.SlurmClient method)</a>

diff --git a/index.html b/index.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Welcome to Omero Slurm Client’s documentation! &mdash; Omero Slurm Client 1 documentation</title>
+  <title>Welcome to BIOMERO’s documentation! &mdash; Omero Slurm Client 1 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -39,7 +39,7 @@
   </form>
 </div>
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
-              <p class="caption" role="heading"><span class="caption-text">Get Started</span></p>
+              <p class="caption" role="heading"><span class="caption-text">BIOMERO - Get Started</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="readme_link.html">BIOMERO - the OMERO Slurm Client library</a></li>
 <li class="toctree-l1"><a class="reference internal" href="readme_link.html#overview">Overview</a></li>
@@ -83,7 +83,7 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="#" class="icon icon-home" aria-label="Home"></a></li>
-      <li class="breadcrumb-item active">Welcome to Omero Slurm Client’s documentation!</li>
+      <li class="breadcrumb-item active">Welcome to BIOMERO’s documentation!</li>
       <li class="wy-breadcrumbs-aside">
             <a href="_sources/index.rst.txt" rel="nofollow"> View page source</a>
       </li>
@@ -93,11 +93,11 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
 
-  <div class="section" id="welcome-to-omero-slurm-client-s-documentation">
-<h1>Welcome to Omero Slurm Client’s documentation!<a class="headerlink" href="#welcome-to-omero-slurm-client-s-documentation" title="Permalink to this headline"></a></h1>
+  <div class="section" id="welcome-to-biomero-s-documentation">
+<h1>Welcome to BIOMERO’s documentation!<a class="headerlink" href="#welcome-to-biomero-s-documentation" title="Permalink to this headline"></a></h1>
 <hr class="docutils" />
 <div class="toctree-wrapper compound">
-<p class="caption" role="heading"><span class="caption-text">Get Started</span></p>
+<p class="caption" role="heading"><span class="caption-text">BIOMERO - Get Started</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="readme_link.html">BIOMERO - the OMERO Slurm Client library</a></li>
 <li class="toctree-l1"><a class="reference internal" href="readme_link.html#overview">Overview</a></li>

diff --git a/modules.html b/modules.html
@@ -40,7 +40,7 @@
   </form>
 </div>
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
-              <p class="caption" role="heading"><span class="caption-text">Get Started</span></p>
+              <p class="caption" role="heading"><span class="caption-text">BIOMERO - Get Started</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="readme_link.html">BIOMERO - the OMERO Slurm Client library</a></li>
 <li class="toctree-l1"><a class="reference internal" href="readme_link.html#overview">Overview</a></li>

diff --git a/objects.inv b/objects.inv