Github Actions New CI Comparison Method #420
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: | |
| push: | |
| branches: [ main, v5.2.x ] | |
| pull_request: | |
| branches: [ main, v5.2.x ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| inputs: | |
| pr: | |
| description: "PR to test" | |
| required: true | |
| jobs: | |
| Model_Testing: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| configuration: [nwm_ana, nwm_long_range, gridded, reach] | |
| runs-on: ubuntu-latest | |
| env: | |
| MPI_HOME: /usr/share/miniconda | |
| NETCDF: /usr/share/miniconda | |
| NETCDF_INCLUDES: /usr/share/miniconda/include | |
| NETCDF_LIBRARIES: /usr/share/miniconda/lib | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Checkout candidate (pull request / push) | |
| if: ${{ github.event_name == 'pull_request' || github.event_name == 'push' }} | |
| uses: actions/checkout@v4 | |
| with: | |
| path: candidate | |
| - name: Checkout candidate (manual) | |
| if: ${{ github.event_name == 'workflow_dispatch' }} | |
| env: | |
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
| run: gh repo clone ${{ github.repository }} candidate && cd candidate && gh pr checkout -R ${{ github.repository }} ${{ github.event.inputs.pr }} | |
| - name: Checkout reference (pull request) | |
| if: ${{ github.event_name == 'pull_request' }} | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.base.ref }} | |
| path: reference | |
| - name: Checkout reference (push) | |
| if: ${{ github.event_name == 'push' }} | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.before }} | |
| path: reference | |
| - name: Checkout reference (manual) | |
| if: ${{ github.event_name == 'workflow_dispatch' }} | |
| env: | |
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
| run: gh repo clone ${{ github.repository }} reference && cd reference && git checkout origin/$(gh pr view ${{ github.event.inputs.pr }} --json baseRefName --jq '.baseRefName') | |
| - name: Install Dependencies With Apt | |
| run: | | |
| sudo apt-get update \ | |
| && sudo apt-get install -yq --no-install-recommends \ | |
| wget \ | |
| curl \ | |
| emacs-nox \ | |
| bzip2 \ | |
| ca-certificates \ | |
| vim \ | |
| libhdf5-dev \ | |
| gfortran \ | |
| g++ \ | |
| valgrind \ | |
| m4 \ | |
| make \ | |
| libswitch-perl \ | |
| git \ | |
| nano \ | |
| tcsh \ | |
| bc \ | |
| less \ | |
| openmpi-bin openmpi-common libopenmpi-dev \ | |
| libxml2-dev \ | |
| libnetcdf-dev \ | |
| libnetcdff-dev | |
| - name: Install Dependencies with pip | |
| run: | | |
| python3 -m pip install matplotlib numpy xarray netCDF4 pygithub | |
| - name: Compile Reference | |
| run: | | |
| cd $GITHUB_WORKSPACE/reference | |
| cmake -B build | |
| make -C build -j | |
| - name: Compile Candidate | |
| run: | | |
| cd $GITHUB_WORKSPACE/candidate | |
| cmake -B build | |
| make -C build -j | |
| # make croton statements download testcase and configure if needed | |
| # - name: Run Reference Command | |
| # run: | | |
| # cd $GITHUB_WORKSPACE/reference/build/Run | |
| # make run-croton-${{ matrix.configuration }} | |
| - name: Run Candidate Command | |
| run: | | |
| cd $GITHUB_WORKSPACE/candidate/build/Run | |
| make run-croton-${{ matrix.configuration }} | |
| - name: Compare Outputs | |
| run: | | |
| cd $GITHUB_WORKSPACE/candidate/build/Run | |
| mkdir output_diff | |
| python -c \ | |
| "import sys; \ | |
| sys.path.append('${GITHUB_WORKSPACE}/candidate/tests'); \ | |
| import compare_output; \ | |
| from pathlib import Path; \ | |
| compare_output.plot_diffs('${GITHUB_WORKSPACE}/candidate/build/Run/output_diff', \ | |
| '${GITHUB_WORKSPACE}/candidate/build/Run/output_${{ matrix.configuration }}/', \ | |
| '${GITHUB_WORKSPACE}/candidate/build/Run/output_${{ matrix.configuration }}/', \ | |
| '${{ matrix.configuration }}')" | |
| - name: Copy test results from container | |
| if: ${{ always() }} | |
| run: | | |
| mkdir -p $GITHUB_WORKSPACE/test_report | |
| cp -r $GITHUB_WORKSPACE/candidate/build/Run/output_diff/* $GITHUB_WORKSPACE/test_report/ | |
| - name: Attach diff plots to PR | |
| if: ${{ always() }} | |
| run: | | |
| cd $GITHUB_WORKSPACE/candidate/tests/local/utils | |
| bash attach_all_plots.bash $(jq --raw-output .pull_request.number "$GITHUB_EVENT_PATH") ${{ matrix.configuration }} | |
| - name: Archive test results to GitHub | |
| if: ${{ always() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-reports | |
| path: | | |
| ${{ github.workspace }}/test_report/**.html | |
| ${{ github.workspace }}/test_report/*/diff_plots |