Github Actions New CI Comparison Method #409
Workflow file for this run
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| name: build | |
| on: | |
| push: | |
| branches: [ main, v5.2.x ] | |
| pull_request: | |
| branches: [ main, v5.2.x ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| inputs: | |
| pr: | |
| description: "PR to test" | |
| required: true | |
| jobs: | |
| Model_Testing: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # configuration: [nwm_ana, nwm_long_range, gridded, reach] | |
| configuration: [nwm, gridded, reach] # gridded-no-lakes, nwm, reach, reach-lakes | |
| runs-on: ubuntu-latest | |
| env: | |
| MPI_HOME: /usr/share/miniconda | |
| NETCDF: /usr/share/miniconda | |
| NETCDF_INCLUDES: /usr/share/miniconda/include | |
| NETCDF_LIBRARIES: /usr/share/miniconda/lib | |
| steps: | |
| # - uses: conda-incubator/setup-miniconda@v3 | |
| # with: | |
| # miniconda-version: "latest" | |
| # activate-environment: foo | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| # - uses: conda-incubator/setup-miniconda@v3 | |
| # with: | |
| # activate-environment: | |
| - name: Checkout candidate (pull request / push) | |
| if: ${{ github.event_name == 'pull_request' || github.event_name == 'push' }} | |
| uses: actions/checkout@v4 | |
| with: | |
| path: candidate | |
| - name: Checkout candidate (manual) | |
| if: ${{ github.event_name == 'workflow_dispatch' }} | |
| env: | |
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
| run: gh repo clone ${{ github.repository }} candidate && cd candidate && gh pr checkout -R ${{ github.repository }} ${{ github.event.inputs.pr }} | |
| - name: Checkout reference (pull request) | |
| if: ${{ github.event_name == 'pull_request' }} | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.base.ref }} | |
| path: reference | |
| - name: Checkout reference (push) | |
| if: ${{ github.event_name == 'push' }} | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.before }} | |
| path: reference | |
| - name: Checkout reference (manual) | |
| if: ${{ github.event_name == 'workflow_dispatch' }} | |
| env: | |
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | |
| run: gh repo clone ${{ github.repository }} reference && cd reference && git checkout origin/$(gh pr view ${{ github.event.inputs.pr }} --json baseRefName --jq '.baseRefName') | |
| - name: Install Dependencies With Apt | |
| run: | | |
| sudo apt-get update \ | |
| && sudo apt-get install -yq --no-install-recommends \ | |
| wget \ | |
| curl \ | |
| emacs-nox \ | |
| bzip2 \ | |
| ca-certificates \ | |
| vim \ | |
| libhdf5-dev \ | |
| gfortran \ | |
| g++ \ | |
| valgrind \ | |
| m4 \ | |
| make \ | |
| libswitch-perl \ | |
| git \ | |
| nano \ | |
| tcsh \ | |
| bc \ | |
| less \ | |
| openmpi-bin openmpi-common libopenmpi-dev \ | |
| libxml2-dev \ | |
| libnetcdf-dev \ | |
| libnetcdff-dev | |
| - name: Install Dependencies with pip | |
| run: | | |
| python3 -m pip install matplotlib numpy xarray netCDF4 | |
| # python3 -m pip install wrfhydropy>=0.0.21 gdown matplotlib numpy importlib-metadata pytest pytest-datadir-ng | |
| # don't think we need nccmp anymore | |
| # - name: Install Dependencies with Conda | |
| # run: | | |
| # conda update conda | |
| # conda install conda-forge::nccmp | |
| - name: which python | |
| run: which python | |
| # # don't need this anymore | |
| # - name: Test Python Pip Package | |
| # run: python -c "import gdown; print('Fin')" | |
| - name: Compile Reference | |
| run: | | |
| cd $GITHUB_WORKSPACE/reference | |
| cmake -B build | |
| make -C build -j | |
| - name: Compile Candidate | |
| run: | | |
| cd $GITHUB_WORKSPACE/candidate | |
| cmake -B build | |
| make -C build -j | |
| # make croton statements download testcase and configure if needed | |
| # - name: Run Reference Command | |
| # run: | | |
| # cd $GITHUB_WORKSPACE/reference/build/Run | |
| # make run-croton-${{ matrix.configuration }} | |
| - name: Run Candidate Command | |
| run: | | |
| cd $GITHUB_WORKSPACE/candidate/build/Run | |
| make run-croton-${{ matrix.configuration }} | |
| - name: Compare Outputs | |
| run: | | |
| cd $GITHUB_WORKSPACE/candidate/build/Run | |
| ls $GITHUB_WORKSPACE/candidate/build/Run | |
| mkdir output_diff | |
| # capitalize all lowercase matrix.configuration testcase name | |
| # capital_config=$(echo "${{ matrix.configuration }}" | awk '{print toupper(substr($0,1,1)) tolower(substr($0,2))}') | |
| capital_config=${{ matrix.configuration }} | |
| python -c \ | |
| "import sys; \ | |
| sys.path.append('${GITHUB_WORKSPACE}/candidate/tests'); \ | |
| import compare_output; \ | |
| from pathlib import Path; \ | |
| compare_output.plot_diffs('${GITHUB_WORKSPACE}/candidate/build/Run/output_diff', \ | |
| '${GITHUB_WORKSPACE}/candidate/build/Run/output_${capital_config}/', \ | |
| '${GITHUB_WORKSPACE}/candidate/build/Run/output_${capital_config}/', \ | |
| '${capital_config}')" | |
| # THESE CAN BE ADDED BACK IN ONCE REFERENCE HAS NEW CI | |
| # "import sys; sys.path.append('${GITHUB_WORKSPACE}/candidate/tests'); \ | |
| # compare_output.plot_diffs('${GITHUB_WORKSPACE}/reference/build/Run/output_diff', \ | |
| # '${GITHUB_WORKSPACE}/reference/build/Run/output_${capital_config}/', \ | |
| # '${GITHUB_WORKSPACE}/candidate/build/Run/output_${capital_config}/', \ | |
| # '${capital_config}')" | |
| # ADD BACK IN AFTER DEBUGGING | |
| # - name: Copy test results from container | |
| # if: ${{ always() }} | |
| # run: docker cp test_container:/home/docker/test_out $GITHUB_WORKSPACE/test_report | |
| # - name: Checkout Github API | |
| # if: ${{ always() }} | |
| # run: | | |
| # pip install pygithub | |
| # - name: Attach diff plots to PR | |
| # if: ${{ always() }} | |
| # run: | | |
| # cd $GITHUB_WORKSPACE/candidate/tests/local/utils | |
| # bash attach_all_plots.bash $(jq --raw-output .pull_request.number "$GITHUB_EVENT_PATH") ${{ matrix.configuration }} | |
| # - name: Archive test results to GitHub | |
| # if: ${{ always() }} | |
| # uses: actions/upload-artifact@v3 | |
| # with: | |
| # name: test-reports | |
| # path: | | |
| # ${{ github.workspace }}/test_report/**.html | |
| # ${{ github.workspace }}/test_report/*/diff_plots |