Github Actions New CI Comparison Method #398
Workflow file for this run
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| name: build | ||
| on: | ||
| push: | ||
| branches: [ main, v5.2.x ] | ||
| pull_request: | ||
| branches: [ main, v5.2.x ] | ||
| # Allows you to run this workflow manually from the Actions tab | ||
| workflow_dispatch: | ||
| inputs: | ||
| pr: | ||
| description: "PR to test" | ||
| required: true | ||
| jobs: | ||
| Model_Testing: | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| # configuration: [nwm_ana, nwm_long_range, gridded, reach] | ||
| configuration: [gridded] # gridded-no-lakes, nwm, reach, reach-lakes | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| MPI_HOME: /usr/share/miniconda | ||
| NETCDF: /usr/share/miniconda | ||
| NETCDF_INCLUDES: /usr/share/miniconda/include | ||
| NETCDF_LIBRARIES: /usr/share/miniconda/lib | ||
| steps: | ||
| # - uses: conda-incubator/setup-miniconda@v3 | ||
| # with: | ||
| # miniconda-version: "latest" | ||
| # activate-environment: foo | ||
| - uses: actions/checkout@v4 | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: '3.10' | ||
| # - uses: conda-incubator/setup-miniconda@v3 | ||
| # with: | ||
| # activate-environment: | ||
| - name: Checkout candidate (pull request / push) | ||
| if: ${{ github.event_name == 'pull_request' || github.event_name == 'push' }} | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| path: candidate | ||
| - name: Checkout candidate (manual) | ||
| if: ${{ github.event_name == 'workflow_dispatch' }} | ||
| env: | ||
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | ||
| run: gh repo clone ${{ github.repository }} candidate && cd candidate && gh pr checkout -R ${{ github.repository }} ${{ github.event.inputs.pr }} | ||
| - name: Checkout reference (pull request) | ||
| if: ${{ github.event_name == 'pull_request' }} | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| ref: ${{ github.event.pull_request.base.ref }} | ||
| path: reference | ||
| - name: Checkout reference (push) | ||
| if: ${{ github.event_name == 'push' }} | ||
| uses: actions/checkout@v4 | ||
| with: | ||
| ref: ${{ github.event.before }} | ||
| path: reference | ||
| - name: Checkout reference (manual) | ||
| if: ${{ github.event_name == 'workflow_dispatch' }} | ||
| env: | ||
| GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} | ||
| run: gh repo clone ${{ github.repository }} reference && cd reference && git checkout origin/$(gh pr view ${{ github.event.inputs.pr }} --json baseRefName --jq '.baseRefName') | ||
| - name: Install Dependencies With Apt | ||
| run: | | ||
| sudo apt-get update \ | ||
| && sudo apt-get install -yq --no-install-recommends \ | ||
| wget \ | ||
| curl \ | ||
| emacs-nox \ | ||
| bzip2 \ | ||
| ca-certificates \ | ||
| vim \ | ||
| libhdf5-dev \ | ||
| gfortran \ | ||
| g++ \ | ||
| valgrind \ | ||
| m4 \ | ||
| make \ | ||
| libswitch-perl \ | ||
| git \ | ||
| nano \ | ||
| tcsh \ | ||
| bc \ | ||
| less \ | ||
| openmpi-bin openmpi-common libopenmpi-dev \ | ||
| libxml2-dev \ | ||
| libnetcdf-dev \ | ||
| libnetcdff-dev | ||
| - name: Install Dependencies with pip | ||
| run: | | ||
| python3 -m pip install wrfhydropy>=0.0.21 gdown matplotlib numpy importlib-metadata pytest pytest-datadir-ng | ||
| # don't think we need nccmp anymore | ||
| # - name: Install Dependencies with Conda | ||
| # run: | | ||
| # conda update conda | ||
| # conda install conda-forge::nccmp | ||
| - name: which python | ||
| run: which python | ||
| # # don't need this anymore | ||
| # - name: Test Python Pip Package | ||
| # run: python -c "import gdown; print('Fin')" | ||
| - name: Compile Reference | ||
| run: | | ||
| cd $GITHUB_WORKSPACE/reference | ||
| cmake -B build | ||
| make -C build -j | ||
| - name: Compile Candidate | ||
| run: | | ||
| cd $GITHUB_WORKSPACE/candidate | ||
| cmake -B build | ||
| make -C build -j | ||
| # make croton statements download testcase and configure if needed | ||
| - name: Run Reference Command | ||
| run: | | ||
| cd $GITHUB_WORKSPACE/reference/build/Run | ||
| make run-croton-${{ matrix.configuration }} | ||
| - name: Run Candidate Command | ||
| run: | | ||
| cd $GITHUB_WORKSPACE/candidate/build/Run | ||
| make run-croton-${{ matrix.configuration }} | ||
| - name: Compare Outputs | ||
| run: | | ||
|
Check failure on line 147 in .github/workflows/test-pr.yml
|
||
| cd $GITHUB_WORKSPACE/reference/build/Run | ||
| python -c \ | ||
| "import sys; sys.path.append('${GITHUB_WORKSPACE}/reference/tests'); \ | ||
| import compare_output; \ | ||
| from pathlib import Path; \ | ||
| compare_output.plot_diffs('${GITHUB_WORKSPACE}/reference/build/Run/output_diff', \ | ||
| '${GITHUB_WORKSPACE}/reference/build/Run/output_${{ matrix.configuration^ }}/', \ | ||
| '${GITHUB_WORKSPACE}/candidate/build/Run/output_${{ matrix.configuration^ }}/', \ | ||
| '${{ matrix.configuration^ }}')" | ||
| # ADD BACK IN AFTER DEBUGGING | ||
| # - name: Copy test results from container | ||
| # if: ${{ always() }} | ||
| # run: docker cp test_container:/home/docker/test_out $GITHUB_WORKSPACE/test_report | ||
| # - name: Checkout Github API | ||
| # if: ${{ always() }} | ||
| # run: | | ||
| # pip install pygithub | ||
| # - name: Attach diff plots to PR | ||
| # if: ${{ always() }} | ||
| # run: | | ||
| # cd $GITHUB_WORKSPACE/candidate/tests/local/utils | ||
| # bash attach_all_plots.bash $(jq --raw-output .pull_request.number "$GITHUB_EVENT_PATH") ${{ matrix.configuration }} | ||
| # - name: Archive test results to GitHub | ||
| # if: ${{ always() }} | ||
| # uses: actions/upload-artifact@v3 | ||
| # with: | ||
| # name: test-reports | ||
| # path: | | ||
| # ${{ github.workspace }}/test_report/**.html | ||
| # ${{ github.workspace }}/test_report/*/diff_plots | ||