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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 241 83

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 16

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 221 106

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 211 47

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 321 repositories
  • workshop-data-visualization-r Public

    Materials for NBIS workshop on data visulalization

    NBISweden/workshop-data-visualization-r’s past year of commit activity
    HTML 2 GPL-3.0 3 1 1 Updated Apr 11, 2025
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 46 1 Updated Apr 11, 2025
  • aMeta Public

    Ancient microbiome snakemake workflow

    NBISweden/aMeta’s past year of commit activity
    Python 24 MIT 14 17 5 Updated Apr 11, 2025
  • GenErode Public

    GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.

    NBISweden/GenErode’s past year of commit activity
    Python 25 GPL-3.0 7 16 1 Updated Apr 11, 2025
  • elixir_evaluation_evaluation Public

    An evaluation of the ELIXIR course evaluation

    NBISweden/elixir_evaluation_evaluation’s past year of commit activity
    Shell 0 GPL-3.0 0 7 0 Updated Apr 11, 2025
  • fungal-trans Public

    A Snakemake workflow for fungal metatranscriptomics

    NBISweden/fungal-trans’s past year of commit activity
    Python 4 MIT 4 1 0 Updated Apr 11, 2025
  • teaching_literature_club Public

    NBIS' teaching literature club

    NBISweden/teaching_literature_club’s past year of commit activity
    Shell 0 GPL-3.0 1 0 0 Updated Apr 11, 2025
  • workshop-mlbiostatistics Public
    NBISweden/workshop-mlbiostatistics’s past year of commit activity
    HTML 16 8 0 0 Updated Apr 11, 2025
  • scQC Public

    Single cell QC analysis pipeline

    NBISweden/scQC’s past year of commit activity
    HTML 1 GPL-3.0 0 0 0 Updated Apr 11, 2025
  • nf-core-aMeta Public

    An nf-core compliant version of aMeta; An ancient metagenomic profiling Snakemake workflow

    NBISweden/nf-core-aMeta’s past year of commit activity
    Nextflow 2 MIT 2 1 2 Updated Apr 10, 2025
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