Dev 0.7.7 - Fixes #291
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Dev 0.7.7 - Fixes #291
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Problem with python 3.12 for duckdb: duckdb/duckdb#9301 |
matinnuhamunada
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Oct 19, 2023
* fix: correct bigslice annotation rule * chore: correct log file * fix: remove gggenomes from main r_notebook env * feat: experimental env for extracting mmseqs2 with gggenomes * fix: handle numpy and matplotlib via conda * notebook: add bigfam query visualization * fix: correct html display for bigfam query * fix: auto detect antismash major version and its env * feat: use custom bigslice with no normalize option * feat: change bigslice threshold * fix: handle empty known resistance table * notebook: add instruction to run bigslice clustering result * notebook: improve display for mash and seqfu * notebook: better instruction to start bigslice server * notebook: correct fastani distances * notebook: add barplot * notebook: add sunburst * notebook: tidy sections * notebook: switch table and figure location * fix: move deeptf roary output to processed folder * notebooks: changen conda env for notebooks * fix: deeptf roary input * notebook: adjust label size and rotation * test: add dry run for other subworkflows * test: omit build database for now * docs: add example report demo * docs: add wrapper icon * chore: bump version to v0.7.7 * fix: pin python version for duckdb * fix: pin python 3.11 for duckdb * fix: add unzip for dbt * docs: simplify install guide * fix: pin duckdb to 0.8.1 from conda
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This PR fixes several issues raised: