chore: change tempdir for eggnog

NBChub · Jan 31, 2024 · ee493b4 · ee493b4
1 parent 8bf7b78
commit ee493b4
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/workflow/rules/eggnog.smk b/workflow/rules/eggnog.smk
@@ -20,13 +20,15 @@ rule eggnog:
         dmnd="resources/eggnog_db/bacteria.dmnd",
     output:
         eggnog_dir=directory("data/interim/eggnog/{strains}/"),
+        tempdir=temp(directory("data/interim/eggnog/tmp/{strains}"))
     conda:
         "../envs/eggnog.yaml"
-    threads: 4
+    threads: 8
     log:
         "logs/eggnog/eggnog/eggnog-{strains}.log",
     shell:
         """
         mkdir -p {output.eggnog_dir}
-        emapper.py -i {input.faa} --decorate_gff "yes" --excel --cpu {threads} -o {wildcards.strains} --output_dir {output.eggnog_dir} --data_dir {input.eggnog_db} &>> {log}
+        mkdir -p {output.tempdir}
+        emapper.py -i {input.faa} --decorate_gff "yes" --excel --cpu {threads} -o {wildcards.strains} --output_dir {output.eggnog_dir} --data_dir {input.eggnog_db} --temp_dir {output.tempdir} &>> {log}
         """