Update AMReX version number - fixes restart bug #154
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* NCIGodfreyFilter: Fix Int Division `m_cdtodz` is between 0 and 1, and we interpolate a set of coefficients from a table. * reset benchmarks Co-authored-by: Tools <warpx@lbl.gov>
* Adding documentation for lxplus * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Adding the new documentation * Apply suggestions from code review Some suggestions from the code review. Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Removing suggestion about miniconda * Switched to using anonymous environment * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fixing the architecture * Apply suggestions from code review Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Update Tools/machines/lxplus-cern/spack.yaml Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Updating env to use pre-installed openmpi * Moving a file * Docs: Now using GCC 11.2.0 * Add OpenMPI Version in Spec * Add CPU target architecture note * One more GCC 9.2.0->11.2.0 Update * Finalize Spack Stack Setup Notes * Move AFS Spack Config to Environment File * Comment on Variations of the Spack Env * Improve git clone and spack activation * Apply suggestions from code review Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Fixing ncurses Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Fix: Spack Concretization (CUDA/Python) Somehow, this concretizes the variants not properly otherwise. * Not using the preinstalled openmpi anymore * updated lxplus.rst * added lxplus_warpx.profile.example * Apply suggestions from code review Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Apply suggestions from code review Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Updated documentation * Added a precisation about warpx.profile * Apply suggestions from code review Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> * Add missing empty newline Co-authored-by: lgiacome <lorenzo.giacome@cern.ch> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Remove an unused counter in BTD particle filtering. Seen first with a HIP diagnostics.
* ABLASTR: particle weights `const` We can declare the particle weights `const` because we don't change values in them during deposition. * DepositCharge: `const`-ify usage
* Add WarpX_amrex_repo and _branch options to Python In python setup, environment variables WARPX_AMREX_REPO and WARPX_AMREX_BRANCH will now set these variables * Update documentation with new compile envvars
* define user attributes, parse them, initialize with respective parsers * fix warning by using static_cast for int attribute as parser returns real * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * clean-up from self-review * adding dimensionless velocity, gamma*v/c and time to parser argument * add documentation * typo in comment * unused var * device vector for kernels * particle attribute in developer doc * data ptr for device vector * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * ignore_unused * Docs: Describe all particle attributes including pre-defined ones :) * Docs: Fix formatting (user params) * Add: 1D and RZ Support * Docs: Fix Typo in Function Declaration * Laser-Ion Example: User-Defined Attrib. Add two user-defined attributes to the laser-ion acceleration example. This is a 2D test. Documents the name in the table of commonly used, user-defined attribute names. The attribute added is the original position of particles, which I like to plot in "potential" plots that correlate original position in the target with final energy. * changing user-interface API with .attribute. and no need for separate 1D 2D 3D RZ code for parser. pos.x/y/z returns the right values * Adding 1D, 3D, and rz tests * attribute in inputs * at(i) * refinining names for inputs for laser ion and acceleration tests * typo in input * reset benchmarks for test-cases that included attributes Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
updates: - [github.com/Lucas-C/pre-commit-hooks: v1.1.11 → v1.1.12](Lucas-C/pre-commit-hooks@v1.1.11...v1.1.12) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Only set modified k to 0 for even number of points * Update Source/FieldSolver/SpectralSolver/SpectralKSpace.cpp
…ECP-WarpX#2788) * Implement injection orthogal to plane * Generalize momentum distribution for flux injection * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Revert "[pre-commit.ci] auto fixes from pre-commit.com hooks" This reverts commit b0cd189. * Revert "Generalize momentum distribution for flux injection" This reverts commit 0a22b1d. * Rotate momentum initialization * Correct flux number when the direction is normal to plane * Update distribution of particles within a cell * Clean-up injection code * Add more documentation * Add more comments * Handle 1D case * Only do the rotation for Gaussian flux profile * Fix compilation error * Correct compilation for GPU * Start adding automated test * Correct sign of velocity * Update to add continuous injection * Finalize test * Correct processing of flux_normal_axis * Add checksum * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix bug * Update script * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update checksum Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* AMReX: Update latest commit * AMReX: Update to 76d08651adb987e3fba6b232e806c5e7c365a8d9
Codecov Report
@@ Coverage Diff @@
## memaster #154 +/- ##
============================================
+ Coverage 79.10% 79.26% +0.16%
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Files 29 30 +1
Lines 3681 3835 +154
============================================
+ Hits 2912 3040 +128
- Misses 769 795 +26
Continue to review full report at Codecov.
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* use ascent 0.8.0 release container * try again * restore * use new install loc
* Correct typo in the relativistic Poisson solver * Fix unused variable * Update benchmark
* ParticleBuffer: Generalize & Move - move the `ParticleBuffer` to ABLASTR - generalize the API - remove `amr_core` argument - use more semantic naming - add docs * Use `amrex::ParticleContainer::make_alike` * Update AMREX to include AMReX-Codes/amrex#2630
Simplified and re-ordered interface for `ablastr::particles::deposit_charge`.
* Implement injection orthogal to plane * Generalize momentum distribution for flux injection * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Revert "[pre-commit.ci] auto fixes from pre-commit.com hooks" This reverts commit b0cd189. * Revert "Generalize momentum distribution for flux injection" This reverts commit 0a22b1d. * Rotate momentum initialization * Correct flux number when the direction is normal to plane * Update distribution of particles within a cell * Clean-up injection code * Add more documentation * Add more comments * Handle 1D case * Only do the rotation for Gaussian flux profile * Fix compilation error * Correct compilation for GPU * Start adding automated test * Correct sign of velocity * Update to add continuous injection * Finalize test * Correct processing of flux_normal_axis * Add checksum * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix bug * Update script * Implement maximum injection time * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add parameter tmin * Make parameter optional ; update documentation * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Try to work-around segfaults with HDF5 when running on more than one node.
* Refactor Current Correction Functions * Clean Up, Reset Benchmark
* Add warning to FieldProbe re: Boosted Frames Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* Update parsing of FieldProbe in 2D and 1D * Fix unused variables * Allow plane probe in 2D and line probe in 1D * doc update
* Adds support for ADIOS engines ECP-WarpX#2866 Input file can now have lines like diag1.adios2_engine.parameters.NumAggregators=2 * Docs for ADIOS engine type and parameters ECP-WarpX#2866 * Aesthetic edit in adios2 engine documentation ECP-WarpX#2866 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Removed debug print statement ECP-WarpX#2866 * Style Updates Co-authored-by: Mehta, Kshitij V <kshitij-v-mehta@github.com> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
* refactor of surface flux diagnostic handling before implementing PHistDiag * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * initial commit of `ParticleHistDiag` * updated changelog and version number * added plotting functionality specifically for ZPlane assemblies * save histogram binning details to file as well * code cleanup * changes requested during PR review * add comment about 2d plotting * remove debugging print statement * further code changes from PR review * Fix typo Co-authored-by: Peter Scherpelz <31747262+peterscherpelz@users.noreply.github.com> * fix another typo Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Peter Scherpelz <31747262+peterscherpelz@users.noreply.github.com>
* refactor of surface flux diagnostic handling before implementing PHistDiag * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * initial commit of `ParticleHistDiag` * updated changelog and version number * added plotting functionality specifically for ZPlane assemblies * save histogram binning details to file as well * code cleanup * changes requested during PR review * add comment about 2d plotting * added Coulomb collision installation to picmi.py * added pairwise Coulomb collision initialization * remove debugging print statement * further code changes from PR review * Fix typo Co-authored-by: Peter Scherpelz <31747262+peterscherpelz@users.noreply.github.com> * fix docstring * cleaned up the logging message for Coulomb scattering Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Peter Scherpelz <31747262+peterscherpelz@users.noreply.github.com>
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