GitHub - ModelDBRepository/223144: Ca2+ oscillations in single astrocytes (Lavrentovich and Hemkin 2008) (python) (Manninen et al 2017)

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Ca2+ oscillations in single astrocytes (Lavrentovich and Hemkin 2008) (python) (Manninen et al 2017)

modeldb.science/223144

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Name		Name	Last commit message	Last commit date
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.ipynb_checkpoints		.ipynb_checkpoints
Lavrentovich2008.ipynb		Lavrentovich2008.ipynb
readme.html		readme.html
screenshot.png		screenshot.png

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<html><pre>
This is the readme for the model for the papers:

1. Lavrentovich M, Hemkin S (2008) A mathematical model of
spontaneous calcium(II) oscillations in astrocytes. J Theor Biol
251:553-60 <a href="http://dx.doi.org/10.1016/j.jtbi.2007.12.011">doi: 10.1016/j.jtbi.2007.12.011</a>

see also Lavrentovich M, Hemkin S (2009) Corrigendum to “A
mathematical model of spontaneous calcium(II) oscillations in
astrocytes” [J. Theor. Biol. 251 (2008) 553–560] Journal of
Theoretical Biology 260(2):332 <a href="http://dx.doi.org/10.1016/j.jtbi.2009.06.005">doi: 10.1016/j.jtbi.2009.06.005</a>

2. Manninen T, Havela R, Linne ML (2017) Reproducibility and
comparability of computational models for astrocyte calcium
excitability Front. Neuroinform.

This jupyter notebook was contributed by Dr T Manninen.

To run, start jupyter notebook on your system and load the ipython
notebook.

This code reproduces (the top trace in below) the trace in Figure 3 in
the 2008 paper:

<img src="./screenshot.png" alt="screenshot" width="550">
</pre></html>