Python notebooks used in Blain et al., 2023, "A tridimensional atlas of the developing human head."
This repository contains the following notebooks:
(1) Mask_Labels.ipynb
Extract segmentation masks made in Syglass from raw TIFF images using tifffile, sci-kit image, and numpy.
(2) QECD_in_Folder.ipynb
Perform quadric edge collapse decimation on a folder of meshes to reduce the filesize of each surface mesh, using pymeshlab.
(3) Merge_Meshes_for_3DP.ipynb
Merges multiple mesh files in a folder into a single file, binarizes it into isotropic voxels and exports a single tiff stack, using pymeshlab and vedo.