Regression in 0.8.6, possilby 0.8.5. parse no longer uses deprecated option 'b' for fastq block size. Acceptance test details follow #154
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MatthewRalston
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Aug 28, 2024
… compositional analysis a "hotfix" because it's essential to the suite's functionality. THe cublas-gemm code was not a success. The module still doesn't compile because of some Cythonization issues outstanding and multiple. Okay, so while I'm figuring out how to properly Strassen, I can work with the regression.pyx file and continue to commit to main.
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Author: Matt Ralston <professional.bio.coder@gmail.com>
Date: Tue Aug 27 13:58:53 2024 -0400
Date: Mon Aug 26 22:40:36 2024 -0400
Date: Fri Aug 16 20:26:20 2024 -0400
Strassen assignment. Struggling with some portions. New to Cython and its documentation. Syntax seems good, agreeable. Some allocate then mutate patterns are bothersome but nothing is too confusing.
Adds CUDA code for delegation of regression multiplications to cublas-gemm. Scaffolding from chatgpt so not entirely valid cython. Still producing errors. THanks in advance.
Closes #154. Patches parse.py to remove deprecated parameter 'b' from legacy/deprecated code. Pushing to main directly.
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Acceptance tested against
.fafiles primarily, so was not detected on 0.8.6 release. Patching.The text was updated successfully, but these errors were encountered: