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Mann Labs

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  1. alphadia alphadia Public

    modular & open DIA search

    Jupyter Notebook 66 5

  2. alphapeptdeep alphapeptdeep Public

    Deep learning framework for proteomics

    Jupyter Notebook 122 22

  3. CKG CKG Public

    Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

    Jupyter Notebook 476 104

  4. alphapept alphapept Public

    A modular, python-based framework for mass spectrometry. Powered by nbdev.

    HTML 176 31

  5. alphatims alphatims Public

    An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

    Python 86 29

  6. alphamap alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    Jupyter Notebook 82 19

Repositories

Showing 10 of 45 repositories
  • scPortrait Public

    scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

    MannLabs/scPortrait’s past year of commit activity
    Python 42 Apache-2.0 3 21 3 Updated Apr 10, 2025
  • scPortrait-notebooks Public
    MannLabs/scPortrait-notebooks’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 1 Updated Apr 10, 2025
  • alphadia Public

    modular & open DIA search

    MannLabs/alphadia’s past year of commit activity
    Jupyter Notebook 66 Apache-2.0 5 20 8 Updated Apr 10, 2025
  • directlfq Public

    Fast and accurate label-free quantification for small and very large numbers of proteomes

    MannLabs/directlfq’s past year of commit activity
    Jupyter Notebook 52 Apache-2.0 5 7 2 Updated Apr 10, 2025
  • alphashared Public

    Shared non-production code for AlphaX packages

    MannLabs/alphashared’s past year of commit activity
    Python 2 Apache-2.0 2 0 2 Updated Apr 10, 2025
  • alphapeptdeep Public

    Deep learning framework for proteomics

    MannLabs/alphapeptdeep’s past year of commit activity
    Jupyter Notebook 122 Apache-2.0 22 25 2 Updated Apr 10, 2025
  • alphabase Public

    Infrastructure of AlphaX ecosystem

    MannLabs/alphabase’s past year of commit activity
    Jupyter Notebook 37 Apache-2.0 9 8 5 Updated Apr 10, 2025
  • alpharaw Public

    An open-source Python package to unify raw MS data accession and storage.

    MannLabs/alpharaw’s past year of commit activity
    Jupyter Notebook 23 Apache-2.0 6 8 1 Updated Apr 10, 2025
  • alphapeptstats Public

    Python Package for the downstream analysis of mass-spectrometry-based proteomics data

    MannLabs/alphapeptstats’s past year of commit activity
    Jupyter Notebook 67 Apache-2.0 16 23 11 Updated Apr 7, 2025
  • alphaviz Public

    AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.

    MannLabs/alphaviz’s past year of commit activity
    Python 32 Apache-2.0 3 10 1 Updated Apr 6, 2025
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