updated news

NEWS.md

@@ -1,5 +1,6 @@
 # gnomeR (development version)
-
+- More explicit separation between which are exported vs internal-only functions.
+- Removed the sanitize_mutations(), sanitize_cna(), sanitize_fusions() functions and instead replaced them with smaller, more modular and explicit functions that do all the same tasks. (#328)
 - Added `extract_patient_id()` function to get IMPACT patient ID from sample ID
 - Deprecated `freq_cutoff`, `freq_cutoff_by_gene`, and `gene_subset` arguments in `tbl_genomic()`. It is now recommended that users use `subset_by_frequency()` instead before passing data to `tbl_genomic()`.
 - Added `other_vars` argument to `subset_by_frequency()`, `subset_by_panel()`, `summarize_by_gene()` and `add_pathways()` to allow retention of other clinical vars when using functions within pipeline.

codemeta.json

@@ -371,7 +371,7 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "2349.143KB",
+  "fileSize": "2352.03KB",
   "releaseNotes": "https://github.com/MSKCC-Epi-Bio/gnomeR/blob/master/NEWS.md",
   "readme": "https://github.com/MSKCC-Epi-Bio/gnomeR/blob/main/README.md",
   "contIntegration": ["https://github.com/MSKCC-Epi-Bio/gnomeR/actions", "https://app.codecov.io/gh/MSKCC-Epi-Bio/gnomeR?branch=main"],