simplify and update doc environment (#372) #809
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| name: mesmer CI-CD | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - 'v*' | |
| pull_request: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| linting: | |
| runs-on: "ubuntu-latest" | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Create conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: mesmer-linting | |
| environment-file: environment.yml | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install mesmer | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Conda info | |
| run: | | |
| conda info -a | |
| conda list | |
| - name: Import mesmer | |
| run: | | |
| python -c "import mesmer" | |
| - name: isort | |
| run: isort --check mesmer examples tests setup.py | |
| - name: black | |
| if: always() | |
| run: black --check mesmer examples tests setup.py docs/source/conf.py | |
| - name: flake8 | |
| if: always() | |
| run: flake8 mesmer examples tests setup.py | |
| test: | |
| name: py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.9", "3.11", "3.12"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Set environment variables | |
| run: | | |
| echo "CONDA_ENV_FILE=environment.yml" >> $GITHUB_ENV | |
| echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
| - name: Create conda environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-name: mesmer-tests | |
| cache-downloads: true | |
| cache-downloads-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}" | |
| micromamba-version: 'latest' | |
| environment-file: ${{ env.CONDA_ENV_FILE }} | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install mesmer | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Conda info | |
| run: | | |
| conda info -a | |
| - name: Conda list | |
| run: conda list | |
| - name: Test installation | |
| run: python scripts/test_install.py | |
| - name: Run tests | |
| run: python -u -m pytest | |
| -r a -v | |
| --all | |
| --cov=mesmer | |
| --cov-report=xml | |
| - name: Upload code coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| env_vars: RUNNER_OS,PYTHON_VERSION | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| deploy-pypi: | |
| needs: [linting,test] | |
| if: | | |
| startsWith(github.ref, 'refs/tags/v') | |
| && (github.ref == 'refs/heads/main') | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.9] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip wheel twine | |
| - name: Create package | |
| run: python setup.py sdist bdist_wheel --universal | |
| - name: Publish package to PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.pypi_password }} |