Merge branch 'master' of github.com:LinguaPhylo/linguaPhylo

LinguaPhylo · Apr 23, 2024 · e06a09d · e06a09d
2 parents 1ae01df + f22089d
commit e06a09d
Showing 1 changed file with 2 additions and 7 deletions.
diff --git a/...base/src/main/java/lphy/base/evolution/coalescent/populationmodel/GompertzPopulation.java b/...base/src/main/java/lphy/base/evolution/coalescent/populationmodel/GompertzPopulation.java
@@ -216,10 +216,10 @@ private double rombergIntegrator(UnivariateFunction function, double t) {
     @Override
     public double getInverseIntensity(double x) {
         double targetIntensity = x;
-        //double targetIntensity = 1000;
 
         double proportionForT1 = 0.01;
         double proportionForT50 = 0.5;
+        double time = 0;
 
         double t1 = getTimeForGivenProportion(proportionForT1);
         double t50 = getTimeForGivenProportion(proportionForT50);
@@ -230,7 +230,7 @@ public double getInverseIntensity(double x) {
 
         double deltaTime = growthPhaseTime / 100;
 
-        double time = Math.max(t1,0);
+        //double time = Math.max(t1,0);
         double intensity = getIntensity(time);
         System.out.println("t1 = " + t1);
 
@@ -249,17 +249,12 @@ public double getInverseIntensity(double x) {
             System.err.println("Solver failed: " + e.getMessage());
             return Double.NaN;
         }
-
-
-        // return time;
-        //return Math.max(time, 0);
     }
 
 
 
 
 
-
     @Override
     public boolean isAnalytical() {
         return false; //use numerical method here