LinearSankoff

Run LinearSankoff with default setting:

cat sample.fasta | ./linearsankoff

Arguments:

• w: weight on alignment (DEFAULT=0.3)

• b: beam size (DEFAULT=100, 0 for exact search)

• branch: allow to add extra branch in one sequence (DEFAULT=FALSE)

Run LinearSankoff with specific requirements:

cat sample.fasta | ./linearsankoff -w 0.4 -b 200 --branch