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Laboratory for Metabolic Systems Engineering

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  1. Compound_Protein_Interac_Pred Compound_Protein_Interac_Pred Public

    Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling

    Python 17 5

  2. impact impact Public

    Forked from nvenayak/impact

    The impact framework is designed to help scientists extract insight from experimental data in a transparent and reproducible fashion.

    Python 4 2

  3. aybrah aybrah Public

    Analyzing Yeasts by Reconstructing Ancestry of Homologs

    HTML 4 1

  4. fyrment fyrment Public

    Fungi pan-genome-scale network reconstruction

    Python 4 1

  5. Community_Gap-Filling Community_Gap-Filling Public

    Source code and input files for reproducing the results presented in "A gap-filling algorithm for prediction of metabolic interactions in microbial communities".

    MATLAB 3 1

  6. REVOLVER-protein-purifier REVOLVER-protein-purifier Public

    Repository for building and operating REVOLVER: An automatic protein purification system for gravity columns. Developed at the University of Toronto.

    C++ 3 1

Repositories

Showing 10 of 43 repositories
  • Seq_to_Func_Pred_Model Public

    Sequence-to-Function Learning Predictive Model

    LMSE/Seq_to_Func_Pred_Model’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 21, 2024
  • Seq-to-Func-Learning-Marjan Public

    Seq-to-Func-Learning-Marjan

    LMSE/Seq-to-Func-Learning-Marjan’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 9, 2024
  • community_engineering Public

    Increasing evenness and stability in synthetic microbial consortia

    LMSE/community_engineering’s past year of commit activity
    Python 0 0 0 0 Updated Mar 26, 2024
  • FOCUS_v1 Public Forked from ruhichoudhary/FOCUS_v1
    LMSE/FOCUS_v1’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Mar 25, 2024
  • ocFBA Public

    This is the main repository for the paper Understanding bacterial adaptation to osmotic stress through the lenses of thermodynamics

    LMSE/ocFBA’s past year of commit activity
    Python 0 0 0 0 Updated Mar 22, 2024
  • CoCulture_KnockOut_Protocol_2023 Public Forked from bhanum1/CoCulture_KnockOut_Protocol_2023

    Bhanu's 2023 summer project.

    LMSE/CoCulture_KnockOut_Protocol_2023’s past year of commit activity
    MATLAB 0 1 0 0 Updated Sep 6, 2023
  • SprintGapFiller Public

    For fast gap filling in microbial communities

    LMSE/SprintGapFiller’s past year of commit activity
    MATLAB 1 MIT 0 0 0 Updated Aug 18, 2023
  • Generative_Protein_Design_Datasets Public Forked from ranaabarghout/Generative_Protein_Design_Datasets

    A repository highlighting and linking existing resources and datasets for generative protein modeling.

    LMSE/Generative_Protein_Design_Datasets’s past year of commit activity
    1 2 0 0 Updated Jul 11, 2023
  • Anneal-Path Public

    Simulated Annealing-based branched novel biochemical pathway prediction tool

    LMSE/Anneal-Path’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Apr 29, 2023
  • PathwayLenPred Public

    Machine Learning-based biochemical pathway length prediction

    LMSE/PathwayLenPred’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Mar 13, 2023
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