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2023-11-06-bert_ner_alexander_learn_bert_finetuned_ner_accelerate_en #14054

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Add model 2023-11-06-bert_ner_bc5cdr_chemical_disease_balanced_sapber…
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_modified_bioformers_2_en
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Add model 2023-11-06-bert_ner_bc5cdr_chem_original_biobert_384_en
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Add model 2023-11-06-bert_ner_bc5cdr_chem_modified_pubmed_full_3_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_modified_pubmedbert_ful…
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Add model 2023-11-06-bert_ner_bc5cdr_chem_original_pubmedbert_512_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_modified_pubmedabstract…
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Add model 2023-11-06-bert_ner_bc5cdr_chem_modified_scibert_512_en
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Add model 2023-11-06-bert_ner_bionlp13cg_modified_biobert_v1.1_latest_en
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Add model 2023-11-06-bert_ner_bc5cdr_chemical_imbalanced_pubmedbert_en
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Add model 2023-11-06-bert_ner_bc5cdr_disease_modified_scibert_scivoca…
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_imbalanced_biobert_en
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Add model 2023-11-06-bert_ner_bc4chemd_chem_original_scibert_512_en
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Add model 2023-11-06-bert_ner_bc5cd_chem_modified_pubmedbert_512_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_chem_original_biobert_5…
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Add model 2023-11-06-bert_ner_biored_chem_modified_pubmedbert_128_5_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_chem_original_bluebert_…
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Add model 2023-11-06-bert_ner_biored_chem_original_pubmedbert_256_13_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_chem_original_bluebert_…
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_modified_scibert_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_modified_pubmedbert_384_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_modified_biobert_384_en
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Add model 2023-11-06-bert_ner_bionlp13_modified_pubmedbert_384_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_modified_pubmedbert_512_en
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Add model 2023-11-06-bert_ner_biored_chem_modified_pubmedbert_128_10_en
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Add model 2023-11-06-bert_ner_anery_bert_finetuned_ner_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_modified_biobert_large_en
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Add model 2023-11-06-bert_ner_bc5cdr_chemical_disease_balanced_pubmed…
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_chem_original_scibert_3…
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Add model 2023-11-06-bert_ner_biored_chem_modified_pubmedbert_384_5_en
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Add model 2023-11-06-bert_ner_bionlp13cg_modified_bluebert_pubmed_unc…
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Add model 2023-11-06-bert_ner_bionlp13cg_original_pubmedbert_abstract…
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Add model 2023-11-06-bert_ner_bc5cdr_disease_imbalanced_biomednlp_pub…
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Add model 2023-11-06-bert_ner_bc5cdr_disease_modified_biobert_v1.1_en
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Add model 2023-11-06-bert_ner_biored_chem_modified_pubmedbert_512_5_en
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Add model 2023-11-06-bert_ner_bionlp13_modified_scibert_384_en
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Add model 2023-11-06-bert_ner_bionlp13_modified_scibert_512_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_modified_bioformers_en
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Add model 2023-11-06-bert_ner_bc5cdr_chem_original_biobert_512_en
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Add model 2023-11-06-bert_ner_ce_bert_finetuned_ner_ce
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Add model 2023-11-06-bert_ner_epiextract4gard_v1_en
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Add model 2023-11-06-bert_ner_bc5cdr_chemical_modified_pubmedbert_en
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Add model 2023-11-06-bert_ner_mascariddu8_bert_finetuned_ner_accelera…
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Add model 2023-11-06-bert_ner_biored_dis_modified_pubmedbert_384_8_10_en
ahmedlone127 Nov 6, 2023
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Add model 2023-11-06-bert_ner_kb_bert_base_swedish_cased_ner_sv
ahmedlone127 Nov 6, 2023
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Add model 2023-11-06-bert_ner_bc4_original_biobert_v1.1_en
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Add model 2023-11-06-bert_ner_davemse_bert_finetuned_ner_en
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Add model 2023-11-06-bert_ner_estbert_ner_en
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Add model 2023-11-06-bert_ner_bc2gm_gene_imbalancedpubmedbert_en
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Add model 2023-11-06-bert_ner_bc5cdr_disease_imbalanced_scibert_scivo…
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Add model 2023-11-06-bert_ner_far75brbert_base_en
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Add model 2023-11-06-bert_ner_model_org_2_en
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Add model 2023-11-06-bert_ner_ghost1_bert_finetuned_ner_accelerate_en
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Add model 2023-11-06-bert_ner_bc5cdr_chemical_disease_balanced_sciber…
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Add model 2023-11-06-bert_ner_original_biobert_ncbi_en
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Add model 2023-11-06-bert_ner_bc5cdr_chem_original_scibert_512_en
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Add model 2023-11-06-bert_ner_biored_chem_modified_pubmedbert_256_5_en
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Add model 2023-11-06-bert_ner_ner_conll2003_v3_en
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Add model 2023-11-06-bert_ner_bc5cdr_chemical_imbalanced_bluebert_pub…
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Add model 2023-11-06-bert_ner_mohitsingh_wikineural_multilingual_ner_en
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Add model 2023-11-06-bert_ner_conll12v2_en
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Add model 2023-11-06-bert_ner_orignial_bluebert_ncbi_en
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Add model 2023-11-06-bert_ner_nonzerophilip_bert_finetuned_ner_en
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Add model 2023-11-06-bert_ner_shwetabh_wikineural_multilingual_ner_en
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Add model 2023-11-06-bert_ner_vikasmani_wikineural_multilingual_ner_en
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Add model 2023-11-06-bert_ner_vikings03_wikineural_multilingual_ner_en
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Add model 2023-11-06-bert_ner_model_org_en
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Add model 2023-11-06-bert_ner_original_bluebert_bc5cdr_disease_en
ahmedlone127 Nov 6, 2023
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Add model 2023-11-06-bert_ner_biored_dis_original_pubmedbert_384_8_en
ahmedlone127 Nov 6, 2023
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Add model 2023-11-06-bert_ner_wlt_biobert_ncbi_en
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Add model 2023-11-06-bert_ner_bc5cdr_imbalanced_pubmedbert_en
ahmedlone127 Nov 6, 2023
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Add model 2023-11-06-bert_ner_idrisi_lmr_hd_tb_en
ahmedlone127 Nov 6, 2023
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Add model 2023-11-06-bert_ner_original_scibert_bc2gm_en
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Add model 2023-11-06-bert_ner_original_bluebert_bc4chemd_en
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Add model 2023-11-06-bert_ner_bionlp13cg_chem_original_biobert_384_en
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Add model 2023-11-06-bert_ner_indicner_xx
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Add model 2023-11-06-bert_ner_original_bluebert_biored_chem_512_5_30_en
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Add model 2023-11-06-bert_ner_original_biobert_linnaeus_en
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Add model 2023-11-06-bert_ner_vanmas_bert_finetuned_ner_en
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Add model 2023-11-06-bert_ner_wende_bert_finetuned_ner_accelerate_en
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Add model 2023-11-06-bert_ner_biored_dis_modified_pubmedbert_384_8_en
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Add model 2023-11-06-bert_ner_bc5cdr_disease_imbalanced_bluebert_pubm…
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Add model 2023-11-06-bert_ner_original_scibert_bc5cdr_disease_en
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Add model 2023-11-06-bert_ner_original_bluebert_bc2gm_en
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Add model 2023-11-06-bert_ner_sebastians_bert_finetuned_ner_en
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Add model 2023-11-06-bert_ner_biored_chem_original_pubmedbert_128_5_en
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Add model 2023-11-06-bert_ner_craft_modified_bluebert_512_en
ahmedlone127 Nov 6, 2023
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Add model 2023-11-06-bert_ner_bc4_original_biomednlp_pubmedbert_base_…
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Add model 2023-11-06-bert_ner_awilli_bert_finetuned_ner_en
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Add model 2023-11-06-bert_ner_swedish_sentiment_fear_targets_sv
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Add model 2023-11-06-bert_ner_biored_chem_modified_pubmedbert_128_32_en
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Add model 2023-11-06-bert_ner_nlp_cic_wfu_clinical_cases_ner_paragrap…
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Add model 2023-11-06-bert_ner_wlt_pubmedbert_linnaeus_en
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Add model 2023-11-06-bert_ner_swedish_sentiment_violence_targets_sv
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Add model 2023-11-06-bert_ner_wlt_bluebert_linnaeus_en
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Add model 2023-11-06-bert_ner_vinspatel4_wikineural_multilingual_ner_en
ahmedlone127 Nov 6, 2023
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Add model 2023-11-06-bert_ner_original_pubmedbert_bc5cdr_chemical_en
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Add model 2023-11-06-bert_ner_autonlp_tele_red_data_model_585716433_en
ahmedlone127 Nov 6, 2023
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Add model 2023-11-06-bert_ner_bc5cdr_disease_modified_pubmedbert_en
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Add model 2023-11-06-bert_ner_craft_original_biobert_384_en
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Original file line number Diff line number Diff line change
@@ -0,0 +1,115 @@
---
layout: model
title: English BertForTokenClassification Cased model (from aditya22)
author: John Snow Labs
name: bert_ner_aditya22_bert_finetuned_ner
date: 2023-11-06
tags: [bert, ner, open_source, en, onnx]
task: Named Entity Recognition
language: en
edition: Spark NLP 5.2.0
spark_version: 3.0
supported: true
engine: onnx
annotator: BertForTokenClassification
article_header:
type: cover
use_language_switcher: "Python-Scala-Java"
---

## Description

Pretrained BertForTokenClassification model, adapted from Hugging Face and curated to provide scalability and production-readiness using Spark NLP. `bert-finetuned-ner` is a English model originally trained by `aditya22`.

## Predicted Entities

`ORG`, `LOC`, `MISC`, `PER`

{:.btn-box}
<button class="button button-orange" disabled>Live Demo</button>
<button class="button button-orange" disabled>Open in Colab</button>
[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/public/models/bert_ner_aditya22_bert_finetuned_ner_en_5.2.0_3.0_1699284189318.zip){:.button.button-orange.button-orange-trans.arr.button-icon}
[Copy S3 URI](s3://auxdata.johnsnowlabs.com/public/models/bert_ner_aditya22_bert_finetuned_ner_en_5.2.0_3.0_1699284189318.zip){:.button.button-orange.button-orange-trans.button-icon.button-copy-s3}

## How to use



<div class="tabs-box" markdown="1">
{% include programmingLanguageSelectScalaPythonNLU.html %}
```python
documentAssembler = DocumentAssembler() \
.setInputCol("text") \
.setOutputCol("document")

sentenceDetector = SentenceDetectorDLModel.pretrained("sentence_detector_dl", "xx")\
.setInputCols(["document"])\
.setOutputCol("sentence")

tokenizer = Tokenizer() \
.setInputCols("sentence") \
.setOutputCol("token")

tokenClassifier = BertForTokenClassification.pretrained("bert_ner_aditya22_bert_finetuned_ner","en") \
.setInputCols(["sentence", "token"]) \
.setOutputCol("ner")

pipeline = Pipeline(stages=[documentAssembler, sentenceDetector, tokenizer, tokenClassifier])

data = spark.createDataFrame([["PUT YOUR STRING HERE"]]).toDF("text")

result = pipeline.fit(data).transform(data)
```
```scala
val documentAssembler = new DocumentAssembler()
.setInputCol("text")
.setOutputCol("document")

val sentenceDetector = SentenceDetectorDLModel.pretrained("sentence_detector_dl", "xx")
.setInputCols(Array("document"))
.setOutputCol("sentence")

val tokenizer = new Tokenizer()
.setInputCols(Array("sentence"))
.setOutputCol("token")

val tokenClassifier = BertForTokenClassification.pretrained("bert_ner_aditya22_bert_finetuned_ner","en")
.setInputCols(Array("sentence", "token"))
.setOutputCol("ner")

val pipeline = new Pipeline().setStages(Array(documentAssembler,sentenceDetector, tokenizer, tokenClassifier))

val data = Seq("PUT YOUR STRING HERE").toDF("text")

val result = pipeline.fit(data).transform(data)
```

{:.nlu-block}
```python
import nlu
nlu.load("en.ner.bert.conll.finetuned.by_aditya22").predict("""PUT YOUR STRING HERE""")
```
</div>

{:.model-param}
## Model Information

{:.table-model}
|---|---|
|Model Name:|bert_ner_aditya22_bert_finetuned_ner|
|Compatibility:|Spark NLP 5.2.0+|
|License:|Open Source|
|Edition:|Official|
|Input Labels:|[document, token]|
|Output Labels:|[ner]|
|Language:|en|
|Size:|403.7 MB|
|Case sensitive:|true|
|Max sentence length:|128|

## References

References

- https://huggingface.co/aditya22/bert-finetuned-ner
- https://paperswithcode.com/sota?task=Token+Classification&dataset=conll2003
Original file line number Diff line number Diff line change
@@ -0,0 +1,114 @@
---
layout: model
title: English BertForTokenClassification Cased model (from airi)
author: John Snow Labs
name: bert_ner_airi_bert_finetuned_ner
date: 2023-11-06
tags: [bert, ner, open_source, en, onnx]
task: Named Entity Recognition
language: en
edition: Spark NLP 5.2.0
spark_version: 3.0
supported: true
engine: onnx
annotator: BertForTokenClassification
article_header:
type: cover
use_language_switcher: "Python-Scala-Java"
---

## Description

Pretrained BertForTokenClassification model, adapted from Hugging Face and curated to provide scalability and production-readiness using Spark NLP. `bert-finetuned-ner` is a English model originally trained by `airi`.

## Predicted Entities

`ORG`, `LOC`, `MISC`, `PER`

{:.btn-box}
<button class="button button-orange" disabled>Live Demo</button>
<button class="button button-orange" disabled>Open in Colab</button>
[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/public/models/bert_ner_airi_bert_finetuned_ner_en_5.2.0_3.0_1699282984146.zip){:.button.button-orange.button-orange-trans.arr.button-icon}
[Copy S3 URI](s3://auxdata.johnsnowlabs.com/public/models/bert_ner_airi_bert_finetuned_ner_en_5.2.0_3.0_1699282984146.zip){:.button.button-orange.button-orange-trans.button-icon.button-copy-s3}

## How to use



<div class="tabs-box" markdown="1">
{% include programmingLanguageSelectScalaPythonNLU.html %}
```python
documentAssembler = DocumentAssembler() \
.setInputCol("text") \
.setOutputCol("document")

sentenceDetector = SentenceDetectorDLModel.pretrained("sentence_detector_dl", "xx")\
.setInputCols(["document"])\
.setOutputCol("sentence")

tokenizer = Tokenizer() \
.setInputCols("sentence") \
.setOutputCol("token")

tokenClassifier = BertForTokenClassification.pretrained("bert_ner_airi_bert_finetuned_ner","en") \
.setInputCols(["sentence", "token"]) \
.setOutputCol("ner")

pipeline = Pipeline(stages=[documentAssembler, sentenceDetector, tokenizer, tokenClassifier])

data = spark.createDataFrame([["PUT YOUR STRING HERE"]]).toDF("text")

result = pipeline.fit(data).transform(data)
```
```scala
val documentAssembler = new DocumentAssembler()
.setInputCol("text")
.setOutputCol("document")

val sentenceDetector = SentenceDetectorDLModel.pretrained("sentence_detector_dl", "xx")
.setInputCols(Array("document"))
.setOutputCol("sentence")

val tokenizer = new Tokenizer()
.setInputCols(Array("sentence"))
.setOutputCol("token")

val tokenClassifier = BertForTokenClassification.pretrained("bert_ner_airi_bert_finetuned_ner","en")
.setInputCols(Array("sentence", "token"))
.setOutputCol("ner")

val pipeline = new Pipeline().setStages(Array(documentAssembler,sentenceDetector, tokenizer, tokenClassifier))

val data = Seq("PUT YOUR STRING HERE").toDF("text")

val result = pipeline.fit(data).transform(data)
```

{:.nlu-block}
```python
import nlu
nlu.load("en.ner.bert.airi..by_airi").predict("""PUT YOUR STRING HERE""")
```
</div>

{:.model-param}
## Model Information

{:.table-model}
|---|---|
|Model Name:|bert_ner_airi_bert_finetuned_ner|
|Compatibility:|Spark NLP 5.2.0+|
|License:|Open Source|
|Edition:|Official|
|Input Labels:|[document, token]|
|Output Labels:|[ner]|
|Language:|en|
|Size:|665.1 MB|
|Case sensitive:|true|
|Max sentence length:|128|

## References

References

- https://huggingface.co/airi/bert-finetuned-ner
Original file line number Diff line number Diff line change
@@ -0,0 +1,93 @@
---
layout: model
title: English bert_ner_ajgp_bert_finetuned_ner BertForTokenClassification from AJGP
author: John Snow Labs
name: bert_ner_ajgp_bert_finetuned_ner
date: 2023-11-06
tags: [bert, en, open_source, token_classification, onnx]
task: Named Entity Recognition
language: en
edition: Spark NLP 5.2.0
spark_version: 3.0
supported: true
engine: onnx
annotator: BertForTokenClassification
article_header:
type: cover
use_language_switcher: "Python-Scala-Java"
---

## Description

Pretrained BertForTokenClassification model, adapted from Hugging Face and curated to provide scalability and production-readiness using Spark NLP.`bert_ner_ajgp_bert_finetuned_ner` is a English model originally trained by AJGP.

{:.btn-box}
<button class="button button-orange" disabled>Live Demo</button>
<button class="button button-orange" disabled>Open in Colab</button>
[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/public/models/bert_ner_ajgp_bert_finetuned_ner_en_5.2.0_3.0_1699270662024.zip){:.button.button-orange.button-orange-trans.arr.button-icon}
[Copy S3 URI](s3://auxdata.johnsnowlabs.com/public/models/bert_ner_ajgp_bert_finetuned_ner_en_5.2.0_3.0_1699270662024.zip){:.button.button-orange.button-orange-trans.button-icon.button-copy-s3}

## How to use



<div class="tabs-box" markdown="1">
{% include programmingLanguageSelectScalaPythonNLU.html %}
```python


documentAssembler = DocumentAssembler() \
.setInputCol("text") \
.setOutputCol("documents")


tokenClassifier = BertForTokenClassification.pretrained("bert_ner_ajgp_bert_finetuned_ner","en") \
.setInputCols(["documents","token"]) \
.setOutputCol("ner")

pipeline = Pipeline().setStages([documentAssembler, tokenClassifier])

pipelineModel = pipeline.fit(data)

pipelineDF = pipelineModel.transform(data)

```
```scala


val documentAssembler = new DocumentAssembler()
.setInputCol("text")
.setOutputCol("embeddings")

val tokenClassifier = BertForTokenClassification
.pretrained("bert_ner_ajgp_bert_finetuned_ner", "en")
.setInputCols(Array("documents","token"))
.setOutputCol("ner")

val pipeline = new Pipeline().setStages(Array(documentAssembler, tokenClassifier))

val pipelineModel = pipeline.fit(data)

val pipelineDF = pipelineModel.transform(data)


```
</div>

{:.model-param}
## Model Information

{:.table-model}
|---|---|
|Model Name:|bert_ner_ajgp_bert_finetuned_ner|
|Compatibility:|Spark NLP 5.2.0+|
|License:|Open Source|
|Edition:|Official|
|Input Labels:|[documents, token]|
|Output Labels:|[ner]|
|Language:|en|
|Size:|403.7 MB|

## References

https://huggingface.co/AJGP/bert-finetuned-ner
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