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Models hub internal #13509

Merged
merged 66 commits into from
Feb 13, 2023
Merged

Models hub internal #13509

merged 66 commits into from
Feb 13, 2023

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Cabir40
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@Cabir40 Cabir40 commented Feb 13, 2023

Description

Motivation and Context

How Has This Been Tested?

Screenshots (if appropriate):

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • Code improvements with no or little impact
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

  • My code follows the code style of this project.
  • My change requires a change to the documentation.
  • I have updated the documentation accordingly.
  • I have read the CONTRIBUTING page.
  • I have added tests to cover my changes.
  • All new and existing tests passed.

Ahmetemintek and others added 30 commits October 19, 2022 19:05
@Ahmetemintek
Add model 2022-10-19-ner_covid_trials_en
fc21e03
@Ahmetemintek
Add model 2022-10-19-ner_jsl_en
7cd4129
@vkocaman
Merge pull request #12953 from JohnSnowLabs/2022-10-19-ner_covid_tria…
1678136 
…ls_en_jBvtnoT0Wc43lRyJe62X6_vj

2022-10-19-ner_covid_trials_en
@HashamUlHaq
Add model 2022-10-25-t5_base_pubmedqa_en
808aeca
@mauro-nievoff
Add model 2022-10-25-ner_oncology_en
5054169
@mauro-nievoff
Add model 2022-10-25-ner_oncology_therapy_en
29512d1
@mauro-nievoff
Add model 2022-10-25-ner_oncology_diagnosis_en
fa4e6ff
@mauro-nievoff
Add model 2022-10-25-ner_oncology_tnm_en
4e38f26
@mauro-nievoff
Add model 2022-10-25-ner_oncology_anatomy_general_en
c4d5544
@mauro-nievoff
Add model 2022-10-25-ner_oncology_demographics_en
fad154d
@mauro-nievoff
Add model 2022-10-25-ner_oncology_test_en
f19d347
@mauro-nievoff
Add model 2022-10-25-ner_oncology_unspecific_posology_en
9e7f69c
@mauro-nievoff
Add model 2022-10-25-ner_oncology_anatomy_granular_en
b189864
@mauro-nievoff
Add model 2022-10-25-ner_oncology_response_to_treatment_en
bceabd6
@mauro-nievoff
Add model 2022-10-25-ner_oncology_biomarker_en
7de9179
@mauro-nievoff
Add model 2022-10-25-ner_oncology_posology_en
1487652
@vkocaman
Merge pull request #12984 from JohnSnowLabs/2022-10-25-t5_base_pubmed…
f4e7815 
…qa_en__mINk_ndYcK9LjqEMOc4vmj7

2022-10-25-t5_base_pubmedqa_en
@Cabir40
updated bancmark
25c01ea
@mauro-nievoff
Benchmark format updating
4b8785b
@mauro-nievoff
Benchmark format updating
5740c9e
@mauro-nievoff
Benchmark format updating
dc2aede
@mauro-nievoff
Benchmark format updating
751a717
@mauro-nievoff
Update 2022-10-25-ner_oncology_anatomy_general_en.md
82d68aa
@mauro-nievoff
Benchmark format updating
21057d2
@mauro-nievoff
Benchmark format updating
6d54bf8
@mauro-nievoff
Benchmark format updating
cae01bb
@mauro-nievoff
Benchmark format update
7df2fd9
@mauro-nievoff
Benchmark format update
f675d8d
@mauro-nievoff
Benchmark format update
8739091
@mauro-nievoff
Benchmark format update
1590752
jsl-models and others added 28 commits November 3, 2022 18:45
@jsl-models @mauro-nievoff
Add model 2022-11-03-oncology_general_pipeline_en (#13031)
452d8d3 
Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
@jsl-models @mauro-nievoff @muhammetsnts
2022-11-04-oncology_diagnosis_pipeline_en (#13038)
9a009b7 
* Add model 2022-11-04-oncology_diagnosis_pipeline_en

* Add model 2022-11-04-oncology_biomarker_pipeline_en

* Add model 2022-11-04-oncology_therapy_pipeline_en

* Update 2022-11-04-oncology_diagnosis_pipeline_en.md

* Update 2022-11-04-oncology_diagnosis_pipeline_en.md

* Update 2022-11-04-oncology_diagnosis_pipeline_en.md

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: mauro-nievoff <55700369+mauro-nievoff@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
@jsl-models @gokhanturer @Cabir40
2022-11-15-ner_sdoh_slim_wip_en (#13088)
ddd470a 
* Add model 2022-11-15-ner_sdoh_slim_wip_en

* Update 2022-11-15-ner_sdoh_slim_wip_en.md

* Update 2022-11-15-ner_sdoh_slim_wip_en.md

* Update 2022-11-15-ner_sdoh_slim_wip_en.md

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
@jsl-models @Ahmetemintek
Add model 2022-11-16-abbreviation_category_mapper_en (#13095)
6cc8988 
Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
@jsl-models @Ahmetemintek
2022-11-18-kegg_disease_mapper_en (#13113)
8a3d199 
* Add model 2022-11-18-kegg_disease_mapper_en

* Add model 2022-11-21-kegg_drug_mapper_en

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
@jsl-models @Cabir40
2022-11-22-ner_deid_generic_bert_ro (#13121)
45b58cd 
* Add model 2022-11-22-ner_deid_generic_bert_ro

* Add model 2022-11-22-ner_clinical_bert_ro

* Add model 2022-11-22-ner_living_species_300_es

Co-authored-by: Cabir40 <cabir4006@gmail.com>
@jsl-models @Ahmetemintek
2022-11-24-ner_oncology_anatomy_general_en (#13139)
2e76412 
* Add model 2022-11-24-ner_oncology_anatomy_general_en

* Add model 2022-11-24-ner_oncology_anatomy_granular_en

* Add model 2022-11-24-ner_oncology_biomarker_en

* Add model 2022-11-24-ner_oncology_demographics_en

* Add model 2022-11-24-ner_oncology_diagnosis_en

* Add model 2022-11-24-ner_oncology_en

* Add model 2022-11-24-ner_oncology_posology_en

* Add model 2022-11-24-ner_oncology_response_to_treatment_en

* Add model 2022-11-24-ner_oncology_test_en

* Add model 2022-11-24-ner_oncology_therapy_en

* Add model 2022-11-24-ner_oncology_tnm_en

* Add model 2022-11-24-ner_oncology_unspecific_posology_en

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
@Meryem1425
Merge branch 'master' into models_hub_internal
58d2765
@jsl-models @mauro-nievoff
2022-12-01-oncology_general_pipeline_en (#13178)
9884ae8 
* Add model 2022-12-01-oncology_general_pipeline_en

* Add model 2022-12-01-oncology_diagnosis_pipeline_en

* Add model 2022-12-01-oncology_biomarker_pipeline_en

* Add model 2022-12-01-oncology_therapy_pipeline_en

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
@jsl-models @Ahmetemintek
Add model 2022-12-15-drug_category_mapper_en (#13230)
20e6f12 
Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
@jsl-models @Damla-Gurbaz @Cabir40
2022-12-17-ner_sdoh_mentions_en (#13245)
f163725 
* Add model 2022-12-17-ner_sdoh_mentions_en

* Update 2022-12-17-ner_sdoh_mentions_en.md

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
@jsl-models @Damla-Gurbaz
2022-12-18-meddroprof_scielowiki_es (#13252)
ff8b1a0 
* Add model 2022-12-18-meddroprof_scielowiki_es

* Add model 2022-12-18-ner_sdoh_mentions_en

* Add model 2022-12-18-bert_sequence_classifier_sdoh_community_absent_status_en

* Add model 2022-12-18-bert_sequence_classifier_sdoh_community_present_status_en

* Update 2022-12-18-bert_sequence_classifier_sdoh_community_present_status_en.md

* Add model 2022-12-18-bert_sequence_classifier_sdoh_environment_status_en

* Update 2022-12-18-bert_sequence_classifier_sdoh_community_absent_status_en.md

* Update 2022-12-18-bert_sequence_classifier_sdoh_environment_status_en.md

* Update 2022-12-18-meddroprof_scielowiki_es.md

* Update 2022-12-18-ner_sdoh_mentions_en.md

* Add model 2022-12-18-drug_category_mapper_en

* Update 2022-12-18-drug_category_mapper_en.md

* Update 2022-12-18-bert_sequence_classifier_sdoh_community_absent_status_en.md

* Update 2022-12-18-bert_sequence_classifier_sdoh_community_present_status_en.md

* Update 2022-12-18-bert_sequence_classifier_sdoh_environment_status_en.md

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>
@jsl-models @Cabir40
Add model 2022-12-18-ner_sdoh_mentions_test_en (#13259)
038f9d5 
Co-authored-by: Cabir40 <cabir4006@gmail.com>
@Cabir40
Delete 2022-12-15-drug_category_mapper_en.md
d3d8b7c
@Cabir40
Delete 2022-12-17-ner_sdoh_mentions_en.md
3e83552
@Cabir40
Merge branch 'master' into models_hub_internal
a456f0e
@jsl-models
Add model 2023-01-06-redl_clinical_biobert_en (#13313)
c5701b5
@jsl-models @Meryem1425
2023-01-11-ner_oncology_unspecific_posology_healthcare_en (#13328)
ee76bdb 
* Add model 2023-01-11-ner_oncology_unspecific_posology_healthcare_en

* Update 2023-01-11-ner_oncology_unspecific_posology_healthcare_en.md

* Add model 2023-01-11-ner_oncology_biomarker_healthcare_en

* Add model 2023-01-11-ner_oncology_anatomy_general_healthcare_en

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
@jsl-models
2023-01-14-genericclassifier_sdoh_tobacco_usage_sbiobert_cased_mli_en (…
bdf8d16 
…#13348)
@jsl-models @Meryem1425
2023-01-14-redl_ade_biobert_en (#13349)
28e2d76 
* Add model 2023-01-14-redl_ade_biobert_en

* Add model 2023-01-14-redl_bodypart_direction_biobert_en

* Add model 2023-01-14-redl_bodypart_problem_biobert_en

* Update 2023-01-14-redl_ade_biobert_en.md

* Update 2023-01-14-redl_bodypart_direction_biobert_en.md

* Update 2023-01-14-redl_bodypart_problem_biobert_en.md

* Add model 2023-01-14-redl_bodypart_procedure_test_biobert_en

* Add model 2023-01-14-redl_chemprot_biobert_en

* Update 2023-01-14-redl_chemprot_biobert_en.md

* Add model 2023-01-14-redl_clinical_biobert_en

* Add model 2023-01-14-redl_date_clinical_biobert_en

* Add model 2023-01-14-redl_drug_drug_interaction_biobert_en

* Add model 2023-01-14-redl_drugprot_biobert_en

* Add model 2023-01-14-redl_human_phenotype_gene_biobert_en

* Add model 2023-01-15-redl_nihss_biobert_en

* Add model 2023-01-15-redl_oncology_biobert_wip_en

* Add model 2023-01-15-redl_oncology_biomarker_result_biobert_wip_en

* Add model 2023-01-15-redl_oncology_granular_biobert_wip_en

* Add model 2023-01-15-redl_oncology_location_biobert_wip_en

* Add model 2023-01-15-redl_oncology_size_biobert_wip_en

* Add model 2023-01-15-redl_oncology_temporal_biobert_wip_en

* Update 2023-01-14-redl_bodypart_direction_biobert_en.md

* Update 2023-01-14-redl_date_clinical_biobert_en.md

* Update 2023-01-14-redl_date_clinical_biobert_en.md

* Update 2023-01-14-redl_drug_drug_interaction_biobert_en.md

* Update 2023-01-15-redl_oncology_biomarker_result_biobert_wip_en.md

* Update 2023-01-15-redl_oncology_granular_biobert_wip_en.md

* Update 2023-01-15-redl_oncology_size_biobert_wip_en.md

* Update 2023-01-14-redl_bodypart_direction_biobert_en.md

* Update 2023-01-14-redl_bodypart_problem_biobert_en.md

* Update 2023-01-14-redl_bodypart_procedure_test_biobert_en.md

* Update 2023-01-14-redl_chemprot_biobert_en.md

* Update 2023-01-14-redl_clinical_biobert_en.md

* Update 2023-01-15-redl_oncology_biobert_wip_en.md

* Update 2023-01-15-redl_oncology_biomarker_result_biobert_wip_en.md

* Update 2023-01-15-redl_oncology_granular_biobert_wip_en.md

* Add model 2023-01-15-redl_oncology_test_result_biobert_wip_en

* Add model 2023-01-15-redl_temporal_events_biobert_en

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Vildan <64216738+Meryem1425@users.noreply.github.com>
@jsl-models
2023-01-25-ner_eu_clinical_case_en (#13415)
9e2dbd2
@jsl-models
2023-02-01-ner_eu_clinical_case_es (#13454)
1515298
@jsl-models
Add model 2023-02-09-rxnorm_drug_brandname_mapper_en (#13493)
b483fa4
@jsl-models
2023-02-10-ner_sdoh_social_environment_wip_en (#13496)
b4bdec6
@Cabir40
Update 2022-11-24-ner_oncology_anatomy_general_en.md
02ccbb8
fixed conflict
306dacd
@Cabir40
Update 2023-01-06-redl_clinical_biobert_en.md
a6e7371
@jsl-models @Meryem1425 @Cabir40
2023-02-11-ner_sdoh_wip_en (#13507)
b02e212 
* Add model 2023-02-11-ner_sdoh_wip_en

* Update 2023-02-11-ner_sdoh_wip_en.md

---------

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
@vkocaman vkocaman merged commit 18fb633 into master Feb 13, 2023
josejuanmartinez pushed a commit that referenced this pull request Feb 17, 2023
@Cabir40
Models hub internal (#13509)
3040776
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7 participants
@Cabir40 @vkocaman @Ahmetemintek @HashamUlHaq @mauro-nievoff @jsl-models @Meryem1425