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Add model 2022-11-02-icd10cm_resolver_pipeline_en (#13017)
Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
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docs/_posts/Ahmetemintek/2022-11-02-icd10cm_resolver_pipeline_en.md
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--- | ||
layout: model | ||
title: Pipeline to Resolve ICD-10-CM Codes | ||
author: John Snow Labs | ||
name: icd10cm_resolver_pipeline | ||
date: 2022-11-02 | ||
tags: [en, clinical, licensed, resolver, chunk_mapping, pipeline, icd10cm] | ||
task: Pipeline Healthcare | ||
language: en | ||
edition: Spark NLP for Healthcare 4.2.1 | ||
spark_version: 3.0 | ||
supported: true | ||
article_header: | ||
type: cover | ||
use_language_switcher: "Python-Scala-Java" | ||
--- | ||
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## Description | ||
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This pretrained pipeline maps entities with their corresponding ICD-10-CM codes. You’ll just feed your text and it will return the corresponding ICD-10-CM codes. | ||
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{:.btn-box} | ||
<button class="button button-orange" disabled>Live Demo</button> | ||
[Open in Colab](https://colab.research.google.com/github/JohnSnowLabs/spark-nlp-workshop/blob/master/tutorials/Certification_Trainings/Healthcare/3.Clinical_Entity_Resolvers.ipynb){:.button.button-orange.button-orange-trans.co.button-icon} | ||
[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/clinical/models/icd10cm_resolver_pipeline_en_4.2.1_3.0_1667389014041.zip){:.button.button-orange.button-orange-trans.arr.button-icon} | ||
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## How to use | ||
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<div class="tabs-box" markdown="1"> | ||
{% include programmingLanguageSelectScalaPythonNLU.html %} | ||
```python | ||
from sparknlp.pretrained import PretrainedPipeline | ||
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resolver_pipeline = PretrainedPipeline("icd10cm_resolver_pipeline", "en", "clinical/models") | ||
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text = """A 28-year-old female with a history of gestational diabetes mellitus diagnosed eight years and anisakiasis. Also, it was reported that fetal and neonatal hemorrhage""" | ||
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result = resolver_pipeline.fullAnnotate(text) | ||
``` | ||
```scala | ||
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline | ||
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val resolver_pipeline = new PretrainedPipeline("icd10cm_resolver_pipeline", "en", "clinical/models") | ||
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val result = resolver_pipeline.fullAnnotate("""A 28-year-old female with a history of gestational diabetes mellitus diagnosed eight years and anisakiasis. Also, it was reported that fetal and neonatal hemorrhage""") | ||
``` | ||
</div> | ||
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## Results | ||
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```bash | ||
+-----------------------------+---------+------------+ | ||
|chunk |ner_chunk|icd10cm_code| | ||
+-----------------------------+---------+------------+ | ||
|gestational diabetes mellitus|PROBLEM |O24.919 | | ||
|anisakiasis |PROBLEM |B81.0 | | ||
|fetal and neonatal hemorrhage|PROBLEM |P545 | | ||
+-----------------------------+---------+------------+ | ||
``` | ||
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{:.model-param} | ||
## Model Information | ||
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{:.table-model} | ||
|---|---| | ||
|Model Name:|icd10cm_resolver_pipeline| | ||
|Type:|pipeline| | ||
|Compatibility:|Spark NLP for Healthcare 4.2.1+| | ||
|License:|Licensed| | ||
|Edition:|Official| | ||
|Language:|en| | ||
|Size:|3.5 GB| | ||
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## Included Models | ||
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- DocumentAssembler | ||
- SentenceDetector | ||
- TokenizerModel | ||
- WordEmbeddingsModel | ||
- MedicalNerModel | ||
- NerConverter | ||
- ChunkMapperModel | ||
- ChunkMapperModel | ||
- ChunkMapperFilterer | ||
- Chunk2Doc | ||
- BertSentenceEmbeddings | ||
- SentenceEntityResolverModel | ||
- ResolverMerger |