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gnomAD3 not mapping #97

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JamesABaker opened this issue Nov 13, 2020 · 1 comment
Open

gnomAD3 not mapping #97

JamesABaker opened this issue Nov 13, 2020 · 1 comment
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Query Sequences

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@JamesABaker
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cat scripts/external_datasets/gnomad3_ALL.tsv | grep 'PASS' | cut -f24 -d'   ' | sort | uniq | wc                                                                                  
  22016   22016  176783

But...

>>> Protein.objects.filter(residue__variant__variant_source='gnomAD3').distinct('pk').count()
11454
JamesABaker added a commit that referenced this issue Nov 14, 2020
@JamesABaker
Works on #97
6bab203
JamesABaker added a commit that referenced this issue Nov 16, 2020
@JamesABaker
works on #97 and #83
17b6f88
@JamesABaker
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>>> Protein.objects.filter(residue__variant__variant_source='gnomAD3').distinct('pk').count()
19181

Still some missing, but this brings the numbers to better levels

@JamesABaker JamesABaker added this to the Query Sequences milestone Dec 8, 2020
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