cfDNAReferences is a tiny database for cell free DNA analysis. We collected frequently used genome markers/features for our python wrapped pipeline cfDNApipe, which contains many integrated algorithms for cell free DNA analysis.
Note: hg38 is released now.
From Boyle-Lab.
Chromatin size file from UCSC.
CpGisland file from UCSC.
cytoBand information from UCSC.
Genome gaps file from UCSC。
Data for OCF Analysis in cfDNApipe, please see this paper.
These are markers for plasma DNA methylation deconvolution algorithm, please see this paper.
refFlat annotation from UCSC.
From cnvkit.