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release files 2024-12-04 #100

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Dec 4, 2024
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release files 2024-12-04 #100

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release files 2024-12-04
Clare72 Dec 4, 2024
a56e2d0
update_repo
Clare72 Dec 4, 2024
650d320
release files 2024-12-04
Clare72 Dec 4, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/qc.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ jobs:
ontology_qc:
# The type of runner that the job will run on
runs-on: ubuntu-latest
container: obolibrary/odkfull:v1.5.2
container: obolibrary/odkfull:v1.5.4

# Steps represent a sequence of tasks that will be executed as part of the job
steps:
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19 changes: 9 additions & 10 deletions fbdv.obo
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@@ -1,6 +1,6 @@
format-version: 1.2
data-version: fbdv/releases/2024-10-17
date: 17:10:2024 11:23
data-version: fbdv/releases/2024-12-04
date: 04:12:2024 17:03
subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
subsetdef: goslim_aspergillus "Aspergillus GO slim"
Expand All @@ -16,22 +16,21 @@ subsetdef: goslim_yeast "Yeast GO slim"
subsetdef: gosubset_prok "Prokaryotic GO subset"
default-namespace: FlyBase_development_CV
namespace-id-rule: * FBdv:$sequence(8,7000,10000)$
idspace: dc http://purl.org/dc/elements/1.1/
idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl#
idspace: terms http://purl.org/dc/terms/
ontology: fbdv.obo
property_value: dc:creator "http://orcid.org/0000-0002-1373-1705" xsd:string
property_value: dc:creator "http://orcid.org/0000-0002-7073-9172" xsd:string
property_value: dc:creator "https://orcid.org/0000-0001-5948-3092" xsd:string
property_value: dc:creator "https://orcid.org/0000-0002-0027-0858" xsd:string
property_value: dc:description "An ontology of Drosophila melanogaster developmental stages." xsd:string
property_value: dc:title "Drosophila Developmental Ontology" xsd:string
property_value: IAO:0000700 FBdv:00000000
property_value: IAO:0000700 FBdv:00005259
property_value: IAO:0000700 FBdv:00007013
property_value: IAO:0000700 FBdv:00007024
property_value: owl:versionInfo "2024-10-17" xsd:string
property_value: owl:versionInfo "2024-12-04" xsd:string
property_value: terms:creator "http://orcid.org/0000-0002-1373-1705" xsd:string
property_value: terms:creator "http://orcid.org/0000-0002-7073-9172" xsd:string
property_value: terms:creator "https://orcid.org/0000-0001-5948-3092" xsd:string
property_value: terms:creator "https://orcid.org/0000-0002-0027-0858" xsd:string
property_value: terms:description "An ontology of Drosophila melanogaster developmental stages." xsd:string
property_value: terms:license "https://creativecommons.org/licenses/by/4.0/" xsd:string
property_value: terms:title "Drosophila Developmental Ontology" xsd:string

[Term]
id: FBdv:00000000
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4 changes: 2 additions & 2 deletions fly_development.obo
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@@ -1,6 +1,6 @@
format-version: 1.2
data-version: 2024-10-17
date: 17:10:2024 11:23
data-version: 2024-12-04
date: 04:12:2024 17:04
subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
subsetdef: goslim_aspergillus "Aspergillus GO slim"
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4 changes: 2 additions & 2 deletions src/ontology/Makefile
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@@ -1,7 +1,7 @@
# ----------------------------------------
# Makefile for fbdv
# Generated using ontology-development-kit
# ODK Version: v1.5.2
# ODK Version: v1.5.4
# ----------------------------------------
# IMPORTANT: DO NOT EDIT THIS FILE. To override default make goals, use fbdv.Makefile instead

Expand Down Expand Up @@ -46,7 +46,7 @@ REPORT_PROFILE_OPTS =
OBO_FORMAT_OPTIONS =
SPARQL_VALIDATION_CHECKS = owldef-self-reference iri-range label-with-iri multiple-replaced_by dc-properties
SPARQL_EXPORTS = basic-report class-count-by-prefix edges xrefs obsoletes synonyms
ODK_VERSION_MAKEFILE = v1.5.2
ODK_VERSION_MAKEFILE = v1.5.4

TODAY ?= $(shell date +%Y-%m-%d)
OBODATE ?= $(shell date +'%d:%m:%Y %H:%M')
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7 changes: 5 additions & 2 deletions src/ontology/imports/merged_import.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/fbdv/imports/merged_import.owl>
<http://purl.obolibrary.org/obo/fbdv/releases/2024-10-17/imports/merged_import.owl>
Annotation(owl:versionInfo "2024-10-17")
<http://purl.obolibrary.org/obo/fbdv/releases/2024-12-04/imports/merged_import.owl>
Annotation(owl:versionInfo "2024-12-04")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))
Expand Down Expand Up @@ -77,8 +77,11 @@ Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0100001>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/description>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/title>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/contributor>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/creator>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/date>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/description>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/license>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/title>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#default-namespace>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym>))
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