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Fix larval hypodermal muscles #1937

Merged
merged 2 commits into from
Oct 30, 2024
Merged

Fix larval hypodermal muscles #1937

merged 2 commits into from
Oct 30, 2024

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gouttegd
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This PR clears the confusion surrounding the larval “hypodermal (or body wall) muscles“.

It amends the definitions of 'embryonic hypodermal muscle' and 'embryonic/larval hypodermal muscle' to clarify that those terms refer to muscles that have at least one of their ends attached to the hypodermic (body wall), as opposed to muscles that connect other internal body parts together without connecting them to the body wall.

For most larval somatic muscles, in particular all the muscles from the thoracic and abdominal segments, this does not change anything as they are all connected to the hypodermis.

However not all somatic muscles of the head (which are currently all classified under 'hypodermal muscle of the head') are in fact hypodermal, so we re-classify the following muscles:

  • 'larval cardiac outflow muscle': it connects the esophagus to the aorta, without any connection to the hypodermis; we re-classify it as a 'larval somatic muscle' and explicitly make it 'part of' some 'larval head'.
  • 'pharyngeal muscle': not all pharyngeal muscles are hypodermal, so likewise, we re-classify that term as a 'larval somatic muscle' and explicitly make it 'part of' some 'larval head'.

But some children of 'pharyngeal muscle' are in fact hypodermal, so for those, we need to explicitly re-assert them as 'embryonic/larval hypodermal muscle':

  • 'ventral pharyngeal muscle',
  • 'ventral mouthpart muscle 1',
  • and 'dorsal protractor muscle'.

closes #1088

Amend the definitions of 'embryonic hypodermal muscle' and
'embryonic/larval hypodermal muscle' to make it clear that those terms
refer to muscles that have at least one of their ends attached to the
hypodermis (body wall), as opposed to muscles that connect other
internal body parts together without connecting them to the body wall.
All somatic muscles of the head are currently classified as hypodermal.
This is incorrect as not all head muscles are connected to the
hypodermis.

We re-classify the following muscles:

* 'larval cardiac outflow muscle': it connects the esophagus to the
  aorta and is therefore not connected to the hypodermis -> we
  re-classify it as a 'larval somatic muscle' and explicitly make it
  'part of' some 'larval head'.

* 'pharyngeal muscle': not all pharyngeal muscles are hypodermal, so
  likewise, we re-classify that term as a 'larval somatic muscle' and
  explicitly make it 'part of' some 'larval head'.

That last change means that children of 'pharyngeal muscle' are no
longer considered hypodermal, so for those children that are actually
hypodermal, we need to explicitly re-assert them as 'embryonic/larval
hypodermal muscle':

* 'ventral pharyngeal muscle',
* 'ventral mouthpart muscle 1',
* 'dorsal protractor muscle'.
@gouttegd gouttegd self-assigned this Oct 29, 2024
@gouttegd gouttegd merged commit b928fe6 into master Oct 30, 2024
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@gouttegd gouttegd deleted the fix-larval-hypodermal-muscle branch October 30, 2024 15:09
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Review the 'embryonic/larval hypodermal muscle' hierarchy
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