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Merge pull request #1944 from FlyBase/larval-ol-glia
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new and updated larval optic lobe glia
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@Clare72
Clare72 authored Nov 19, 2024
2 parents 5402dcb + 8f4fcea commit 968ca53
Showing 1 changed file with 66 additions and 4 deletions.
70 changes: 66 additions & 4 deletions src/ontology/fbbt-edit.obo
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Expand Up @@ -73554,8 +73554,10 @@ id: FBbt:00047825
name: larval A09e neuron
def: "Neuron of the larval abdominal neuromere that is part of lineage 9. This is a nociceptive integrator neuron, i.e. it is a node of convergence for multiple nociceptive neuron types (Burgos et al., 2018). It ascends to the subesophageal ganglion (Jovanic et al., 2019)." [FlyBase:FBrf0237057, FlyBase:FBrf0238464, FlyBase:FBrf0241547]
is_a: FBbt:00007392 ! projection neuron
is_a: FBbt:00047097 ! primary neuron
relationship: BFO:0000050 FBbt:00001919 ! part of larval central nervous system
relationship: RO:0002100 FBbt:00111264 ! has soma location cell body rind of larval abdominal neuromere
relationship: RO:0002202 FBbt:00001375 ! develops from neuroblast NB3-5
relationship: RO:0013001 FBbt:00001102 ! has synaptic IO in region larval ventral nerve cord
relationship: RO:0013001 FBbt:00100138 ! has synaptic IO in region larval gnathal ganglion
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1373-1705
Expand Down Expand Up @@ -124630,6 +124632,63 @@ is_a: FBbt:00100509 ! developing satellite glial cell
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1373-1705
property_value: http://purl.org/dc/terms/date "2024-10-30T11:52:48Z" xsd:dateTime

[Term]
id: FBbt:00053293
name: larval tract neuropil ensheathing glial cell
def: "Glial cell of the larval central nervous system that lies along the surface of a tract (Plazaola-Sasieta et al., 2019)." [FlyBase:FBrf0243725]
is_a: FBbt:00047837 ! embryonic/larval ensheathing glial cell
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1373-1705
property_value: http://purl.org/dc/terms/date "2024-11-18T17:13:13Z" xsd:dateTime

[Term]
id: FBbt:00053294
name: larval outer optic chiasma giant glial cell
def: "Larval glial cell that develops from a larval medulla glial cell, wraps photoreceptor axons and becomes an adult outer optic chiasma giant glial cell (Plazaola-Sasieta et al., 2019)." [FlyBase:FBrf0243725]
synonym: "larval inner chiasm glial cell" EXACT [FlyBase:FBrf0243725]
synonym: "larval Xgi" EXACT [FlyBase:FBrf0243725]
is_a: FBbt:00053293 ! larval tract neuropil ensheathing glial cell
relationship: BFO:0000050 FBbt:00007676 ! part of larval optic anlage
relationship: RO:0002202 FBbt:00053297 ! develops from larval medulla glial cell
relationship: RO:0002203 FBbt:00100526 ! develops into adult outer optic chiasma giant glial cell
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1373-1705
property_value: http://purl.org/dc/terms/date "2024-11-18T17:53:03Z" xsd:dateTime

[Term]
id: FBbt:00053295
name: larval inner optic chiasma giant glial cell
def: "Larval glial cell that develops from a larval medulla glial cell and becomes an adult inner optic chiasma giant glial cell (Plazaola-Sasieta et al., 2019)." [FlyBase:FBrf0243725]
synonym: "larval outer chiasm glial cell" EXACT [FlyBase:FBrf0243725]
synonym: "larval Xgo" EXACT [FlyBase:FBrf0243725]
is_a: FBbt:00047837 ! embryonic/larval ensheathing glial cell
relationship: BFO:0000050 FBbt:00007676 ! part of larval optic anlage
relationship: RO:0002202 FBbt:00053297 ! develops from larval medulla glial cell
relationship: RO:0002203 FBbt:00100527 ! develops into adult inner optic chiasma giant glial cell
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1373-1705
property_value: http://purl.org/dc/terms/date "2024-11-18T18:21:55Z" xsd:dateTime

[Term]
id: FBbt:00053296
name: larval optic anlage palisade glial cell
def: "Larval glial cell that arises from a medulla glial cell (Plazaola-Sasieta et al., 2019). These cells form a barrier beween the developing lamina and lobula plate (Plazaola-Sasieta et al., 2019)." [FlyBase:FBrf0243725]
comment: Distinct from chiasma and satellite glia, but unknown what (if anything) these cells become in the adult (Plazaola-Sasieta et al., 2019).
synonym: "larval pag" EXACT [FlyBase:FBrf0243725]
is_a: FBbt:00001251 ! larval glial cell
relationship: BFO:0000050 FBbt:00007676 ! part of larval optic anlage
relationship: RO:0002202 FBbt:00053297 ! develops from larval medulla glial cell
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1373-1705
property_value: http://purl.org/dc/terms/date "2024-11-18T18:41:22Z" xsd:dateTime

[Term]
id: FBbt:00053297
name: larval medulla glial cell
def: "Larval glial cell that arises from the DL1 neuroblast and migrates to the optic anlage, where it differentiates into a more specific glial cell type in the vicinity of the developing medulla (Plazaola-Sasieta et al., 2019)." [FlyBase:FBrf0243725]
synonym: "larval DL1 lineage glial cell" EXACT []
synonym: "larval meg" EXACT [FlyBase:FBrf0243725]
is_a: FBbt:00001251 ! larval glial cell
relationship: RO:0002202 FBbt:00100609 ! develops from neuroblast CP2
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-1373-1705
property_value: http://purl.org/dc/terms/date "2024-11-18T18:45:31Z" xsd:dateTime

[Term]
id: FBbt:00057000
name: early-mid elongation-stage spermatid
Expand Down Expand Up @@ -146035,14 +146094,15 @@ property_value: http://purl.org/dc/terms/date "2011-05-12T04:07:06Z" xsd:dateTim
[Term]
id: FBbt:00100525
name: adult optic chiasma glial cell
def: "Glial cell of the adult fly that is located in the optic chiasm (Tix et al., 1997). Members of this group of glial cells are arranged in rows between successive dorsoventral sheets of intercrossing fibers of the outer and inner chiasmata (Edwards and Meinertzhagen, 2010; Tix et al., 1997)." [FlyBase:FBrf0096428, FlyBase:FBrf0210316]
def: "Glial cell of the adult fly that is located in the optic chiasm (Tix et al., 1997). It develops from neuroblast DL1 (CP2) (Viktorin et al., 2013; Ren et al., 2018; Plazaola-Sasieta et al., 2019). Members of this group of glial cells are arranged in rows between successive dorsoventral sheets of intercrossing fibers of the outer and inner chiasmata (Edwards and Meinertzhagen, 2010; Tix et al., 1997)." [FlyBase:FBrf0096428, FlyBase:FBrf0210316, FlyBase:FBrf0221770, FlyBase:FBrf0239137, FlyBase:FBrf0243725]
comment: Kremer et al. (2017) expression analysis suggests that these are types of ensheathing glia - inner tract glia likely to be synaptic neuropil ensheathing, outer tract glia likely to be tract neuropil ensheathing - https://orcid.org/0000-0002-1373-1705.
synonym: "adult optic chiasm glial cell" EXACT []
synonym: "adult XG" EXACT [FlyBase:FBrf0234767]
synonym: "giant glial cell" RELATED []
is_a: FBbt:00100504 ! adult ensheathing glial cell
relationship: BFO:0000050 FBbt:00003701 ! part of adult optic lobe
relationship: RO:0002131 FBbt:00003921 ! overlaps optic chiasma
relationship: RO:0002202 FBbt:00100609 ! develops from neuroblast CP2
property_value: http://purl.org/dc/terms/contributor https://www.researchgate.net/scientific-contributions/Simon-Reeve-2162827703
property_value: http://purl.org/dc/terms/date "2011-05-23T01:49:16Z" xsd:dateTime

Expand All @@ -146058,6 +146118,7 @@ synonym: "adult XGO" EXACT [FlyBase:FBrf0234767]
is_a: FBbt:00049491 ! adult tract neuropil ensheathing glial cell
is_a: FBbt:00100525 ! adult optic chiasma glial cell
relationship: BFO:0000050 FBbt:00005810 ! part of first optic chiasma
relationship: RO:0002202 FBbt:00053294 ! develops from larval outer optic chiasma giant glial cell
property_value: http://purl.org/dc/terms/contributor https://www.researchgate.net/scientific-contributions/Simon-Reeve-2162827703
property_value: http://purl.org/dc/terms/date "2011-05-23T02:00:22Z" xsd:dateTime

Expand All @@ -146073,6 +146134,7 @@ synonym: "adult XGI" EXACT [FlyBase:FBrf0234767]
is_a: FBbt:00049490 ! adult synaptic neuropil ensheathing glial cell
is_a: FBbt:00100525 ! adult optic chiasma glial cell
relationship: RO:0002131 FBbt:00003922 ! overlaps second optic chiasma
relationship: RO:0002202 FBbt:00053295 ! develops from larval inner optic chiasma giant glial cell
property_value: http://purl.org/dc/terms/contributor https://www.researchgate.net/scientific-contributions/Simon-Reeve-2162827703
property_value: http://purl.org/dc/terms/date "2011-05-23T02:29:31Z" xsd:dateTime

Expand Down Expand Up @@ -164350,10 +164412,10 @@ property_value: http://purl.org/dc/terms/date "2015-11-27T14:46:24Z" xsd:dateTim
[Term]
id: FBbt:00111302
name: optic-lobe-associated cortex glial cell
def: "Glial cell that makes up the layer of optic-lobe-associated cortex glia. It is located underneath the subperineurial glial sheath, closest to the neuroepithelium in third instar larva and adults." [FlyBase:FBrf0223187]
comment: Despite the name, these cells are surface-associated, not cell body-associated.
def: "Surface-associated glial cell of the optic lobe that is part of a layer found below the perineurial and subperineurial optic lobe glia (Morante et al., 2013). These cells can be identified by their relatively large nuclei and are found from third instar through to adult stages (Morante et al., 2013). They are cell body glial cells (Morante et al., 2013; Plazaola-Sasieta et al., 2019)." [FlyBase:FBrf0223187, FlyBase:FBrf0243725]
subset: cur
is_a: FBbt:00001252 ! CNS surface glial cell
synonym: "optic lobe surface-associated cortex glial cell" EXACT [FlyBase:FBrf0243725]
is_a: FBbt:00001297 ! cell body glial cell
property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0001-5948-3092
property_value: http://purl.org/dc/terms/date "2015-11-28T12:30:04Z" xsd:dateTime

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