Multiqc #72
Workflow file for this run
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| #inspired by https://docs.cirro.bio/pipelines/development/#automated-testing | |
| name: test | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: setup BATS | |
| uses: mig4/setup-bats@v1 | |
| with: | |
| bats-version: 1.2.1 | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-java@v2 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '17' | |
| - name: install nextflow | |
| run: | | |
| wget -qO- get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| - name: stub run | |
| run: nextflow run main.nf --input ./samplesheet.csv -stub -profile test --max_cpus 1 --max_memory '8GB' | |