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Go to directory apm_parallel

To compile

mpicc -o apm_<type> src/apm_<type>.c 

To run

mpirun -np 4 ./apm_<type> 0 <path_to_dna>/<file_name>.fa <pattern_1> <pattern_2> <pattern_3> ...

EZtrace

OpenMP

make CC="eztrace_cc gcc"
eztrace -t omp ./apm_<type> 0 <path_to_dna>/<file_name> <pattern_1> <pattern_2> <pattern_3> ...

MPI

mpirun -np <nb_threads> eztrace -t mpi ./apm_<type> 0 <path_to_dna>/<file_name> <pattern_1> <pattern_2> <pattern_3> ...

To See The EZtrace

eztrace_convert ****_log_rank_1
vite eztrace_output.trace

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