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Changes for v0.0.9#71

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bgpalmer merged 15 commits intomainEPPIcenter/mad4hatter:mainfrom changes-for-v0.0.9EPPIcenter/mad4hatter:changes-for-v0.0.9Copy head branch name to clipboardMar 10, 2023

+221-282

Commits

Commits on Feb 21, 2023

• update parallelization implementation in the postprocessing module

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Commits on Mar 10, 2023

• small changes

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• small changes

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• decreased memory footprint in one intermediate object in the postprocessing module

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• add preprocesing table to check allele counts

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• dockerfile updates

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• paused

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• Revert "paused"

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• memory improvements

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• more memory improvements

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• memory improvements with original seq ids

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• need to add sid to group

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• remove allele table sorting + print

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• add pandoc to apptainer

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• remove last reference to dada gap penalty

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