Updated new dlite-parse tests

tests/entities/Molecule.yaml

@@ -1,35 +1,34 @@
 da31ff66-98af-590c-855d-386c63617755:
-  da31ff66-98af-590c-855d-386c63617755:
-    uuid: da31ff66-98af-590c-855d-386c63617755
-    uri: http://onto-ns.com/meta/0.1/Molecule
-    meta: http://onto-ns.com/meta/0.3/EntitySchema
-    description: A minimal description of a molecules
-    dimensions:
-      natoms: Number of atoms
-      ncoords: Number coordinates. Always 3
-    properties:
-      name:
-        type: string
-        description: Name of the molecule.
-      positions:
-        type: float64
-        shape:
-        - natoms
-        - ncoords
-        unit: "\xC5ngstr\xF6m"
-        description: Atomic positions in Cartesian coordinates.
-      symbols:
-        type: string
-        shape:
-        - natoms
-        description: Chemical symbols.
-      masses:
-        type: float64
-        shape:
-        - natoms
-        unit: u
-        description: Atomic masses.
-      groundstate_energy:
-        type: float64
-        unit: eV
-        description: Molecule ground state energy.
+  uuid: da31ff66-98af-590c-855d-386c63617755
+  uri: http://onto-ns.com/meta/0.1/Molecule
+  meta: http://onto-ns.com/meta/0.3/EntitySchema
+  description: A minimal description of a molecules
+  dimensions:
+    natoms: Number of atoms
+    ncoords: Number coordinates. Always 3
+  properties:
+    name:
+      type: string
+      description: Name of the molecule.
+    positions:
+      type: float64
+      shape:
+      - natoms
+      - ncoords
+      unit: "\xC5ngstr\xF6m"
+      description: Atomic positions in Cartesian coordinates.
+    symbols:
+      type: string
+      shape:
+      - natoms
+      description: Chemical symbols.
+    masses:
+      type: float64
+      shape:
+      - natoms
+      unit: u
+      description: Atomic masses.
+    groundstate_energy:
+      type: float64
+      unit: eV
+      description: Molecule ground state energy.

tests/strategies/paths.py

@@ -11,6 +11,7 @@
 entitydir = testdir / "entities"
 inputdir = testdir / "input"
 outputdir = testdir / "output"
+staticdir = testdir / "static"
 
 
 # Add utils to sys path

tests/strategies/test_parse.py

@@ -12,17 +12,17 @@
     from oteapi_dlite.models import DLiteSessionUpdate
 
 
-def test_parse_no_options(
-    static_files: "Path",
-) -> None:
+# if True:
+def test_parse_no_options() -> None:
     """Test the dlite-parse strategy."""
 
     import dlite
     from oteapi.datacache import DataCache
+    from paths import staticdir
 
     from oteapi_dlite.strategies.parse import DLiteParseStrategy
 
-    sample_file = static_files / "molecule.json"
+    sample_file = staticdir / "molecule.json"
 
     cache = DataCache()
 
@@ -45,23 +45,25 @@ def test_parse_no_options(
     assert "collection_id" in output
     assert output.collection_id == coll.uuid
 
-    # How to reach the instance if we do not have a label?
-    # coll2: dlite.Collection = dlite.get_instance(session["collection_id"])
-    # inst: dlite.Instance = coll2.get("instance")
-    # assert ...
+    # Get all instances of given metaid (there should only be one instance)
+    metaid = "http://onto-ns.com/meta/0.1/Molecule"
+    instances = list(coll.get_instances(metaid=metaid))
+    assert len(instances) == 1
+    (inst,) = instances
+    assert inst.meta.uri == metaid
 
 
-def test_parse_label(
-    static_files: "Path",
-) -> None:
+# if True:
+def test_parse_label() -> None:
     """Test the dlite-parse strategy."""
 
     import dlite
     from oteapi.datacache import DataCache
+    from paths import staticdir
 
     from oteapi_dlite.strategies.parse import DLiteParseStrategy
 
-    sample_file = static_files / "molecule.json"
+    sample_file = staticdir / "molecule.json"
 
     cache = DataCache()