update input data path; nco invocation in pre-processing #593
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chengzhuzhang
commented
May 27, 2022
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@forsyth2 I left some comments, just in case zppy needs the similar updates.
| @@ -10,7 +10,7 @@ source /global/common/software/e3sm/anaconda_envs/load_latest_e3sm_unified_cori- | |||
| start="0051" | |||
| end="0060" | |||
| caseid="20210528.v2rc3e.piControl.ne30pg2_EC30to60E2r2.chrysalis" | |||
| drc_in=/global/cscratch1/sd/forsyth/e3sm_unified_test_zppy/${caseid}/archive/atm/hist | |||
| drc_in=/global/cfs/cdirs/e3smdata/zppy_complete_run_nersc_output/${caseid}/archive/atm/hist | |||
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Model data for testing has moved to a more permanent location.
| @@ -59,17 +59,17 @@ drc_rgr=${dir_out_diurnal_climo}/rgr | |||
| drc_out=${dir_out_diurnal_climo}/native | |||
| echo ${drc_in} | |||
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| cd ${drc_in};eval ls ${caseid}.${atm_name}.h4.*{${start}..${end}}*.nc | ncclimo -P ${atm_name} --clm_md=hfc --caseid=${caseid}.${atm_name}.h4 -v PRECT --ypf=1 --yr_srt=${start} --yr_end=${end} --drc_out=${drc_out} -O $drc_rgr --map=${map_file} | |||
| cd ${drc_in};eval ls ${caseid}.${atm_name}.h4.*{${start}..${end}}*.nc | ncclimo -P ${atm_name} --clm_md=hfc --caseid=${caseid}.${atm_name}.h4 -v PRECT --yr_srt=${start} --yr_end=${end} --drc_out=${drc_out} -O $drc_rgr --map=${map_file} | |||
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The --ypf option now is an implicit way of triggering timeseries even when --clm_md=hfc is specified, because --ypf (years per file) makes no sense for a climatology
| ## | ||
| echo "Generating per-variable monthly time-series." | ||
| drc_rgr=${dir_out_ts}/rgr | ||
| drc_out=${dir_out_ts}/native | ||
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| echo "Variables for Streamflow" | ||
| cd ${drc_in_river};eval ls ${caseid}*mosart.h0.*{${start}..${end}}*.nc | ncclimo --caseid=${caseid} --var_xtr=areatotal2 -v RIVER_DISCHARGE_OVER_LAND_LIQ --yr_srt=$start --yr_end=$end --drc_out=${drc_rgr} | ||
| cd ${drc_in_river};eval ls ${caseid}*mosart.h0.*{${start}..${end}}*.nc | ncclimo --caseid=${caseid} --var_xtr=areatotal2 -v RIVER_DISCHARGE_OVER_LAND_LIQ --yr_srt=$start --yr_end=$end --drc_out=${drc_rgr} --split |
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The --split option now is the explicit way of triggering timeseries. Without it, this line invokes climatology mode.
| # | ||
| echo "Variables for supporting diags using monthly time series as input(ENSO, QBO, etc.)" | ||
| cd ${drc_in};eval ls ${caseid}.${atm_name}.h0.*{${start}..${end}}*.nc | ncclimo -P ${atm_name} --caseid=${caseid} --var=U,CLDHGH,CLDLOW,CLDMED,CLDTOT,FLNS,FLUT,FSNS,FSNT,FSNTOA,LANDFRAC,LHFLX,LWCF,OCNFRAC,PRECC,PRECL,PSL,QFLX,SHFLX,SWCF,T,TAUX,TAUY,TREFHT,TS --yr_srt=$start --yr_end=$end --drc_out=${drc_out} -O $drc_rgr --map=${map_file} | ||
| cd ${drc_in};eval ls ${caseid}.${atm_name}.h0.*{${start}..${end}}*.nc | ncclimo -P ${atm_name} --caseid=${caseid} --var=U,CLDHGH,CLDLOW,CLDMED,CLDTOT,FLNS,FLUT,FSNS,FSNT,FSNTOA,LANDFRAC,LHFLX,LWCF,OCNFRAC,PRECC,PRECL,PSL,QFLX,SHFLX,SWCF,T,TAUX,TAUY,TREFHT,TS --yr_srt=$start --yr_end=$end --drc_out=${drc_out} -O $drc_rgr --map=${map_file} --split |
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same comment for --split as above.
I created E3SM-Project/zppy#254 to look into that. |
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Update input data path to a more permanent location;
Update NCO invocation for recent NCO API changes.