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Correct ocean conservation check settings #6643

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merged 7 commits into from
Sep 27, 2024
Merged

Correct ocean conservation check settings #6643

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a2fb3e7
Correct ocean conservation check settings
mark-petersen Sep 24, 2024
beca87f
Change conservationCheckOutput to append clobber mode
xylar Sep 25, 2024
ff5aa6f
Add a stealth ERS test for conservation check AM
xylar Sep 25, 2024
663e880
Update stealth test based on review
mark-petersen Sep 25, 2024
448f4f1
Fix sed command
xylar Sep 25, 2024
2982d4a
Update conservation_check test to remove sed command
xylar Sep 26, 2024
87182bb
Fix readme for the new test
xylar Sep 26, 2024
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1 change: 1 addition & 0 deletions cime_config/tests.py
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Original file line number Diff line number Diff line change
Expand Up @@ -266,6 +266,7 @@
"SMS_D_Ld1.T62_oQU240wLI.GMPAS-IAF-PISMF.mpaso-impl_top_drag",
"SMS_D_Ld1.T62_oQU240.GMPAS-IAF.mpaso-harmonic_mean_drag",
"SMS_D_Ld1.T62_oQU240.GMPAS-IAF.mpaso-upwind_advection",
"ERS_Ld5_D.T62_oQU240.GMPAS-IAF.mpaso-conservation_check",
)
},

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27 changes: 0 additions & 27 deletions components/mpas-ocean/bld/namelist_files/namelist_defaults_mpaso.xml
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Expand Up @@ -1232,37 +1232,10 @@

<!-- AM_conservationCheck -->
<config_AM_conservationCheck_enable>.false.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="SOwISC12to60E2r4">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="ECwISC30to60E2r1">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="IcoswISC30E3r5">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="IcosXISC30E3r7">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="FRISwISC08to60E3r1">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="FRISwISC04to60E3r1">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="FRISwISC02to60E3r1">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="FRISwISC01to60E3r1">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_enable ocn_grid="RRSwISC6to18E3r5">.true.</config_AM_conservationCheck_enable>
<config_AM_conservationCheck_compute_interval>'dt'</config_AM_conservationCheck_compute_interval>
<config_AM_conservationCheck_output_stream>'conservationCheckOutput'</config_AM_conservationCheck_output_stream>
<config_AM_conservationCheck_compute_on_startup>.false.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="SOwISC12to60E2r4">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="ECwISC30to60E2r1">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="IcoswISC30E3r5">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="IcosXISC30E3r7">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="FRISwISC08to60E3r1">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="FRISwISC04to60E3r1">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="FRISwISC02to60E3r1">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="FRISwISC01to60E3r1">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_compute_on_startup ocn_grid="RRSwISC6to18E3r5">.true.</config_AM_conservationCheck_compute_on_startup>
<config_AM_conservationCheck_write_on_startup>.false.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="SOwISC12to60E2r4">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="ECwISC30to60E2r1">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="IcoswISC30E3r5">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="IcosXISC30E3r7">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="FRISwISC08to60E3r1">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="FRISwISC04to60E3r1">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="FRISwISC02to60E3r1">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="FRISwISC01to60E3r1">.true.</config_AM_conservationCheck_write_on_startup>
<config_AM_conservationCheck_write_on_startup ocn_grid="RRSwISC6to18E3r5">.true.</config_AM_conservationCheck_write_on_startup>
Comment on lines -1247 to -1265
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I agree that we want all these changes based on my comment #6642 (comment)

<config_AM_conservationCheck_write_to_logfile>.true.</config_AM_conservationCheck_write_to_logfile>
<config_AM_conservationCheck_restart_stream>'conservationCheckRestart'</config_AM_conservationCheck_restart_stream>

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2 changes: 1 addition & 1 deletion components/mpas-ocean/cime_config/buildnml
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Expand Up @@ -1156,7 +1156,7 @@ def buildnml(case, caseroot, compname):
lines.append(' filename_interval="00-01-00_00:00:00"')
lines.append(' reference_time="01-01-01_00:00:00"')
lines.append(' output_interval="00-00-01_00:00:00"')
lines.append(' clobber_mode="truncate"')
lines.append(' clobber_mode="append"')
lines.append(' packages="conservationCheckAMPKG">')
lines.append('')
lines.append('<var name="xtime"/>')
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10 changes: 10 additions & 0 deletions components/mpas-ocean/cime_config/testdefs/testmods_dirs/mpaso/conservation_check/README
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@@ -0,0 +1,10 @@
This testdef is used to test the conservation check analysis member, which
wasintroduced in MPAS-Ocean PR #4521 and has been made a stealth feature in
#6643. This test turns on the consevation check analysis member by setting:

config_AM_conservationCheck_enable = .true.

However, it shoudl be noted that MPAS-Ocean history files are not currently
included in E3SM testing so non-BFB results will not be detected unless one
manually changes to 'compname="mpaso" exclude_testing="false"' in the file
cime_config/config_archive.xml.
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one quick comment -- even changing exclude_testing won't check any of the mpaso history files. Plus there's a minor misspelling: "shoudl"

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@jonbob, okay, I understood that it would but I must be mistaken. I have removed this text and fixed the typo.

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@xylar -- it should, but in practice none of the history files matches the file check in env_archive.xml. I did play around with it, and it works if we modify that file with this:

    <comp_archive_spec compclass="ocn" compname="mpaso">
      <rest_file_extension>rst</rest_file_extension>
      <rest_file_extension>rst.am.timeSeriesStatsMonthly</rest_file_extension>
      <hist_file_extension>hist.am.conservationCheck\..*\.nc$</hist_file_extension>
      <rest_history_varname>unset</rest_history_varname>

where I added the conservationCheck line -- or actually replaced a line that had no effect. Now it actually does use the conservationCheck am for the test: this from TestStatus.log:

    ERS_Ld5_D.T62_oQU240.GMPAS-IAF.chrysalis_intel.mpaso-conservation_check.20240925_131015_n3zwao.mpaso.hist.am.conservationCheck.0001-01-01.nc.base matched ERS_Ld5_D.T62_oQU240.GMPAS-IAF.chrysalis_intel.mpaso-conservation_check.20240925_131015_n3zwao.mpaso.hist.am.conservationCheck.0001-01-01.nc.rest
....
tail -n20 /lcrc/group/e3sm/ac.jwolfe/scratch/chrys/ERS_Ld5_D.T62_oQU240.GMPAS-IAF.chrysalis_intel.mpaso-conservation_check.20240925_131015_n3zwao/run/ERS_Ld5_D.T62_oQU240.GMPAS-IAF.chrysalis_intel.mpaso-conservation_check.20240925_131015_n3zwao.mpaso.hist.am.conservationCheck.0001-01-01.nc.base.cprnc.out

                   1   0.000000000000000E+00   0.000000000000000E+00
                   1   0.000000000000000E+00   0.000000000000000E+00
                   1  (     1) (     1)
          avg abs field values:    0.000000000000000E+00
                                   0.000000000000000E+00
************************************************************************************************************************************

SUMMARY of cprnc:
 A total number of    290 fields were compared
          of which      0 had non-zero differences
               and      0 had differences in fill patterns
               and      0 had different dimension sizes
               and      0 had different data types
 A total number of      5 fields could not be analyzed
 A total number of      0 time-varying fields on file 1 were not found on file 2.
 A total number of      0 time-constant fields on file 1 were not found on file 2.
 A total number of      0 time-varying fields on file 2 were not found on file 1.
 A total number of      0 time-constant fields on file 2 were not found on file 1.
  diff_test: the two files seem to be IDENTICAL

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Okay, clearly a bigger can of worms that remains beyond the scope of this PR. Thanks for being more thorough than I was and for keeping things honest.

1 change: 1 addition & 0 deletions ...ents/mpas-ocean/cime_config/testdefs/testmods_dirs/mpaso/conservation_check/user_nl_mpaso
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config_AM_conservationCheck_enable = .true.