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Add number of nodes to srun on Anvil #3101

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merged 2 commits into from
Aug 5, 2019
Merged

Add number of nodes to srun on Anvil #3101

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4038b2e
Add number of nodes to srun on Anvil
amametjanov Jul 31, 2019
38ca894
Add cpu_bind option to anvil cmake file
amametjanov Aug 1, 2019
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2 changes: 1 addition & 1 deletion cime/config/e3sm/machines/config_machines.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -1148,7 +1148,7 @@
<mpirun mpilib="default">
<executable>srun</executable>
<arguments>
<arg name="num_tasks"> -l -n {{ total_tasks }} </arg>
<arg name="num_tasks"> -l -N {{ num_nodes }} -n {{ total_tasks }} </arg>
<arg name="binding">--cpu_bind=cores</arg>
<arg name="thread_count">-c $SHELL{if [ FALSE = `./xmlquery --value SMP_PRESENT` ];then echo 1;else echo $OMP_NUM_THREADS;fi}</arg>
<arg name="placement">-m plane=$SHELL{if [ FALSE = `./xmlquery --value SMP_PRESENT` ];then echo 36;else echo 36/$OMP_NUM_THREADS|bc;fi}</arg>
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19 changes: 1 addition & 18 deletions components/homme/cmake/machineFiles/anvil.cmake
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Expand Up @@ -31,26 +31,9 @@ SET (NetCDF_C_PATH "${NCCONFIG_OUTPUT}" CACHE STRING "")


SET (USE_MPIEXEC "srun" CACHE STRING "")
SET (USE_MPI_OPTIONS "--cpu_bind=cores" CACHE STRING "")
SET (HOMME_USE_MKL "TRUE" CACHE FILEPATH "") # for Intel
SET (USE_QUEUING FALSE CACHE BOOL "")
# for standalone HOMME builds:
SET (CPRNC_DIR /lcrc/group/acme/tools/cprnc CACHE FILEPATH "")




#EXECUTE_PROCESS(COMMAND nf-config --flibs
# RESULT_VARIABLE NFCONFIG_RESULT
# OUTPUT_VARIABLE NFCONFIG_OUTPUT
# ERROR_VARIABLE NFCONFIG_ERROR
# OUTPUT_STRIP_TRAILING_WHITESPACE
#)
#SET (ADD_LINKER_FLAGS " ${NFCONFIG_OUTPUT} " CACHE STRING "")
#
#EXECUTE_PROCESS(COMMAND nc-config --libs
# RESULT_VARIABLE NCCONFIG_RESULT
# OUTPUT_VARIABLE NCCONFIG_OUTPUT
# ERROR_VARIABLE NCCONFIG_ERROR
# OUTPUT_STRIP_TRAILING_WHITESPACE
#)
#SET (ADD_LINKER_FLAGS " ${NCCONFIG_OUTPUT} " CACHE STRING "")