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Merge branch 'agsalin/mpasli/albany-porting' (PR #414)
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This adds compile and linking details for linking to the Albany solver
under MPAS-LI. Albany is an unstructured-grid finite element code
developed under the PISCEES SciDAC, that itself depends heavily on the
Trilinos solver libraries.

[BFB]

* agsalin/mpasli/albany-porting:
  Fix incorrect logic for velocity solver selection
  Add CXX_LIBS for Melvin so Albany links
  Add Albany build instructions for new Land Ice solver
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@douglasjacobsen
douglasjacobsen committed Dec 22, 2015
2 parents 0bad3b3 + 4cbd92a commit 3eb0bb1
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Showing 3 changed files with 51 additions and 6 deletions.
32 changes: 27 additions & 5 deletions machines-acme/config_compilers.xml
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Expand Up @@ -109,7 +109,7 @@ for mct, etc.
<ADD_CFLAGS DEBUG="FALSE"> -O3 </ADD_CFLAGS>
<ADD_FFLAGS compile_threaded="true"> -qsmp=omp </ADD_FFLAGS>
<ADD_CFLAGS compile_threaded="true"> -qsmp=omp </ADD_CFLAGS>
<ADD_LDFLAGS compile_threaded="true"> -qsmp=omp </ADD_LDFLAGS>
<!--ADD_LDFLAGS compile_threaded="true"> -qsmp=omp </ADD_LDFLAGS-->
<FC_AUTO_R8> -qrealsize=8 </FC_AUTO_R8>
<ADD_FFLAGS DEBUG="TRUE"> -qinitauto=7FF7FFFF -qflttrap=ov:zero:inv:en </ADD_FFLAGS>
<ADD_FFLAGS DEBUG="TRUE" compile_threaded="true"> -qsmp=omp:noopt </ADD_FFLAGS>
Expand Down Expand Up @@ -575,7 +575,7 @@ for mct, etc.
<MPICC> cc </MPICC>
<MPICXX> CC </MPICXX>
<PETSC_PATH>$(PETSC_DIR)</PETSC_PATH>
<ALBANY_PATH>/global/project/projectdirs/acme/software/AlbanyTrilinos_09232015/Albany/build/install</ALBANY_PATH>
<ALBANY_PATH>/global/project/projectdirs/acme/software/AlbanyTrilinos/Albany/build/install</ALBANY_PATH>
</compiler>

<compiler COMPILER="gnu" MACH="mac">
Expand All @@ -598,6 +598,8 @@ for mct, etc.
<PNETCDF_PATH>$(PNETCDFROOT)</PNETCDF_PATH>
<ADD_SLIBS> $(shell $(NETCDF_PATH)/bin/nf-config --flibs) -lblas -llapack</ADD_SLIBS>
<ADD_CPPFLAGS> -DHAVE_COMM_F2C </ADD_CPPFLAGS>
<CXX_LIBS>-lstdc++ -lmpi_cxx</CXX_LIBS>
<ALBANY_PATH>/projects/install/rhel6-x86_64/ACME/AlbanyTrilinos/Albany/build/install</ALBANY_PATH>
</compiler>

<compiler COMPILER="intel" MACH="skybridge">
Expand All @@ -617,6 +619,7 @@ for mct, etc.
<ADD_SLIBS MPILIB="mvapich"> -mkl=cluster </ADD_SLIBS>
<ADD_SLIBS MPILIB="impi"> -mkl=cluster </ADD_SLIBS>
<ADD_SLIBS MPILIB="mpi-serial"> -mkl </ADD_SLIBS>
<ALBANY_PATH>/projects/ccsm/AlbanyTrilinos/Albany/build/install</ALBANY_PATH>
</compiler>

<compiler COMPILER="intel" MACH="redsky">
Expand All @@ -636,6 +639,7 @@ for mct, etc.
<ADD_SLIBS MPILIB="mvapich"> -mkl=cluster </ADD_SLIBS>
<ADD_SLIBS MPILIB="impi"> -mkl=cluster </ADD_SLIBS>
<ADD_SLIBS MPILIB="mpi-serial"> -mkl </ADD_SLIBS>
<ALBANY_PATH>/projects/ccsm/AlbanyTrilinos/Albany/build/install</ALBANY_PATH>
</compiler>

<compiler COMPILER="gnu" MACH="penn">
Expand Down Expand Up @@ -697,8 +701,12 @@ for mct, etc.
<PIO_FILESYSTEM_HINTS>lustre</PIO_FILESYSTEM_HINTS>
<ADD_SLIBS> $(shell nf-config --flibs) </ADD_SLIBS>
<TRILINOS_PATH>/lustre/atlas/world-shared/cli900/cesm/software/Trilinos/Trilinos-11.10.2_gptl/titan-pgi-ci-nophal/install</TRILINOS_PATH>
<CXX_LIBS> -lfmpich -lmpichf90_pgi $(PGI_PATH)/linux86-64/$(PGI_VERSION)/lib/f90main.o </CXX_LIBS>
<CXX_LIBS> -lfmpich -lmpichf90_pgi $(PGI_PATH)/linux86-64/$(PGI_VERSION)/lib/f90main.o /opt/gcc/default/snos/lib64/libstdc++.a </CXX_LIBS>
<SUPPORTS_CXX>TRUE</SUPPORTS_CXX>
<MPIFC> ftn </MPIFC>
<MPICC> cc </MPICC>
<MPICXX> /opt/cray/craype/2.4.0/bin/CC </MPICXX>
<ALBANY_PATH>/ccs/proj/cli106/AlbanyTrilinos/Albany/build/install</ALBANY_PATH>
</compiler>

<compiler COMPILER="pgicuda" MACH="titan">
Expand Down Expand Up @@ -774,14 +782,20 @@ for mct, etc.
<MPICC> mpixlc_r </MPICC>
<!-- This LD is a workaround for darshan initialization on mira (Darshan does -->
<!-- not run if f90 or higher is used for linking -->
<LD> mpixlf77_r </LD>
<LD> mpixlf77_r </LD>
<NETCDF_PATH>/soft/libraries/netcdf/4.3.3-f4.4.1/cnk-xl/current/</NETCDF_PATH>
<PNETCDF_PATH>/soft/libraries/pnetcdf/1.6.0/cnk-xl/current/</PNETCDF_PATH>
<PFUNIT_PATH>/home/santos/pFUnit/pFUnit_IBM</PFUNIT_PATH>
<HDF5_PATH>/soft/libraries/hdf5/1.8.14/cnk-xl/current/ </HDF5_PATH>
<ADD_SLIBS>-L$(NETCDF_PATH)/lib -lnetcdff -lnetcdf -L/soft/libraries/hdf5/1.8.14/cnk-xl/current/lib -lhdf5_hl -lhdf5 -L/soft/libraries/alcf/current/xl/ZLIB/lib -lz -L/soft/libraries/alcf/current/xl/LAPACK/lib -llapack -L/soft/libraries/alcf/current/xl/BLAS/lib -lblas -L/bgsys/drivers/ppcfloor/comm/sys/lib </ADD_SLIBS>
<ADD_SLIBS>-L$(NETCDF_PATH)/lib -lnetcdff -lnetcdf -L/soft/libraries/hdf5/1.8.14/cnk-xl/current/lib -lhdf5_hl -lhdf5 -L/soft/libraries/alcf/current/xl/ZLIB/lib -lz -L/soft/libraries/alcf/current/xl/LAPACK/lib -llapack -L/soft/libraries/alcf/current/xl/BLAS/lib -lblas -L/bgsys/drivers/ppcfloor/comm/sys/lib </ADD_SLIBS>
<PIO_FILESYSTEM_HINTS>gpfs </PIO_FILESYSTEM_HINTS>
<PETSC_PATH>/soft/libraries/petsc/3.5.3.1</PETSC_PATH>
<SUPPORTS_CXX>TRUE</SUPPORTS_CXX>
<CXX_LINKER>CXX</CXX_LINKER>
<CXX_LIBS> -L$(IBM_MAIN_DIR)/xlf/bg/14.1/bglib64 -lxlfmath -lxlf90_r -lxlopt -lxl -L$(IBM_MAIN_DIR)/xlsmp/bg/3.1/bglib64 -lxlsmp </CXX_LIBS>
<ADD_CPPDEFS> -DMPASLI_EXTERNAL_INTERFACE_DISABLE_MANGLING </ADD_CPPDEFS>
<MPICXX> /soft/compilers/bgclang/mpi/bgclang/bin/mpic++11 </MPICXX>
<ALBANY_PATH>/home/agsalin/Albany/build/install</ALBANY_PATH>
</compiler>


Expand All @@ -797,6 +811,12 @@ for mct, etc.
<ADD_SLIBS>-L$(NETCDF_PATH)/lib -lnetcdff -lnetcdf -L/soft/libraries/hdf5/1.8.10/cnk-xl/current/lib -lhdf5 -lhdf5_hl -L/soft/libraries/alcf/current/xl/ZLIB/lib -lz -L/soft/libraries/alcf/current/xl/LAPACK/lib -llapack -L/soft/libraries/alcf/current/xl/BLAS/lib -lblas -L/bgsys/drivers/ppcfloor/comm/sys/lib </ADD_SLIBS>
<PIO_FILESYSTEM_HINTS>gpfs </PIO_FILESYSTEM_HINTS>
<PETSC_PATH>/soft/libraries/petsc/3.5.3.1</PETSC_PATH>
<SUPPORTS_CXX>TRUE</SUPPORTS_CXX>
<CXX_LINKER>CXX</CXX_LINKER>
<CXX_LIBS> -L$(IBM_MAIN_DIR)/xlf/bg/14.1/bglib64 -lxlfmath -lxlf90_r -lxlopt -lxl -L$(IBM_MAIN_DIR)/xlsmp/bg/3.1/bglib64 -lxlsmp </CXX_LIBS>
<ADD_CPPDEFS> -DMPASLI_EXTERNAL_INTERFACE_DISABLE_MANGLING </ADD_CPPDEFS>
<MPICXX> /soft/compilers/bgclang/mpi/bgclang/bin/mpic++11 </MPICXX>
<ALBANY_PATH>/home/agsalin/Albany/build/install</ALBANY_PATH>
</compiler>

<compiler COMPILER="pgi" MACH="blues">
Expand Down Expand Up @@ -1024,6 +1044,7 @@ for mct, etc.
<SCC>gcc</SCC>
<SCXX>g++</SCXX>
<ADD_SLIBS>$(shell $(NETCDF_PATH)/bin/nf-config --flibs) -llapack -lblas</ADD_SLIBS>
<CXX_LIBS>-lstdc++ -lmpi_cxx</CXX_LIBS>
<TRILINOS_PATH>$(TRILINOS_PATH)</TRILINOS_PATH>
<ALBANY_PATH>$(ALBANY_PATH)</ALBANY_PATH>
</compiler>
Expand Down Expand Up @@ -1065,6 +1086,7 @@ for mct, etc.
<SCC>gcc</SCC>
<SCXX>g++</SCXX>
<ADD_SLIBS>$(shell $(NETCDF_PATH)/bin/nf-config --flibs) -llapack -lblas</ADD_SLIBS>
<CXX_LIBS>-lstdc++ -lmpi_cxx</CXX_LIBS>
<TRILINOS_PATH>$(TRILINOS_PATH)</TRILINOS_PATH>
<ALBANY_PATH>$(ALBANY_PATH)</ALBANY_PATH>
</compiler>
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3 changes: 2 additions & 1 deletion scripts-acme/update_acme_tests.py
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Expand Up @@ -93,7 +93,8 @@
"SMS.ne30_m120.A_B1850CN",
"SMS.ne16_ne16.FC5AQUAP",
"SMS_D.f19_g16.B20TRC5",
"SMS_D_Ld3.ne16_ne16.FC5")
"SMS_D_Ld3.ne16_ne16.FC5",
"SMS.f09_g16_a.MPASLIALB_ONLY")
),
}

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22 changes: 22 additions & 0 deletions scripts/Testing/Testlistxml/testlist_allactive.xml
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Expand Up @@ -329,13 +329,20 @@
<grid name="f45_g37">
<test name="ERS">
<machine compiler="intel" testtype="acme_integration">blues</machine>
<machine compiler="intel" testtype="acme_developer">edison</machine>
<machine compiler="intel" testtype="acme_integration">edison</machine>
<machine compiler="gnu" testtype="acme_developer">melvin</machine>
<machine compiler="gnu" testtype="acme_integration">melvin</machine>
<machine compiler="ibm" testtype="acme_integration">mira</machine>
<machine compiler="gnu" testtype="acme_developer">mustang</machine>
<machine compiler="intel" testtype="acme_developer">mustang</machine>
<machine compiler="gnu" testtype="acme_integration">mustang</machine>
<machine compiler="intel" testtype="acme_integration">mustang</machine>
<machine compiler="intel" testtype="acme_developer">skybridge</machine>
<machine compiler="intel" testtype="acme_integration">skybridge</machine>
<machine compiler="pgi" testtype="acme_integration">titan</machine>
<machine compiler="gnu" testtype="acme_developer">wolf</machine>
<machine compiler="intel" testtype="acme_developer">wolf</machine>
<machine compiler="gnu" testtype="acme_integration">wolf</machine>
<machine compiler="intel" testtype="acme_integration">wolf</machine>
</test>
Expand Down Expand Up @@ -1089,6 +1096,21 @@
</test>
</grid>
</compset>
<compset name="MPASLIALB_ONLY">
<grid name="f09_g16_a">
<test name="SMS">
<machine compiler="intel" testtype="acme_integration">edison</machine>
<machine compiler="gnu" testtype="acme_integration">melvin</machine>
<machine compiler="ibm" testtype="acme_integration">mira</machine>
<machine compiler="gnu" testtype="acme_integration">mustang</machine>
<machine compiler="intel" testtype="acme_integration">mustang</machine>
<machine compiler="intel" testtype="acme_integration">skybridge</machine>
<machine compiler="pgi" testtype="acme_integration">titan</machine>
<machine compiler="gnu" testtype="acme_integration">wolf</machine>
<machine compiler="intel" testtype="acme_integration">wolf</machine>
</test>
</grid>
</compset>
<compset name="MPASLI_ONLY">
<grid name="f09_g16_g">
<test name="ERS">
Expand Down

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