Merge branch 'matthewhoffman/mpas/apply_new_log_system' (PR #1442)

This merge introduces the new MPAS log system into ACME.  With this
change, MPAS no longer hijacks stdout and stderr but instead opens its
own log file with a unit number provided by ACME.  This merge updates
the three MPAS submodules to use the new system in each component and
also updates each driver to set up and use it.

With this change, MPAS components no longer uses scratch files to dump
the unwanted output.

Fixes #1133.

[BFB]

* origin/matthewhoffman/mpas/apply_new_log_system:
  Update MPAS submodules to fix logging issues on some compilers
  Change wording on coupling interval message.
  Remove debug conditional on writing/flushing at end of run cycle
  Update ocean submodule, text reduction on ocn.log and ice.log
  Update ocn stream settings to prevent ERROR messages.
  Remove unused stream 'real_world' from mpas-o stream file
  Apply new Log Module in all MPAS components

components/mpas-o/cime_config/buildnml

@@ -285,7 +285,6 @@ if ( -e "$CASEROOT/SourceMods/src.mpaso/$STREAM_NAME" ) {
 	print $stream_file '		output_interval="00-01-00_00:00:00">' . "\n";
 	print $stream_file '' . "\n";
 	print $stream_file '	<stream name="mesh"/>' . "\n";
-	print $stream_file '	<stream name="real_world"/>' . "\n";
 	print $stream_file '	<var_struct name="tracers"/>' . "\n";
 	print $stream_file '	<var name="layerThickness"/>' . "\n";
 	print $stream_file '	<var name="ssh"/>' . "\n";
@@ -659,7 +658,7 @@ if ( -e "$CASEROOT/SourceMods/src.mpaso/$STREAM_NAME" ) {
 	print $stream_file '        filename_interval="00-01-00_00:00:00"' . "\n";
 	print $stream_file '        output_interval="00-01-00_00:00:00"' . "\n";
 	print $stream_file '        clobber_mode="truncate"' . "\n";
-	print $stream_file '        packages="timeSeriesStatsMontlyAMPKG"' . "\n";
+	print $stream_file '        packages="timeSeriesStatsMonthlyAMPKG"' . "\n";
 	print $stream_file '        runtime_format="single_file">' . "\n";
 	print $stream_file '' . "\n";
 	print $stream_file '    <var name="daysSinceStartOfSim"/>' . "\n";
@@ -738,6 +737,7 @@ if ( -e "$CASEROOT/SourceMods/src.mpaso/$STREAM_NAME" ) {
         print $stream_file '        filename_interval="output_interval"' . "\n";
         print $stream_file '        clobber_mode="truncate"' . "\n";
         print $stream_file '        input_interval="initial_only"' . "\n";
+        print $stream_file '        packages="timeSeriesStatsDailyAMPKG"' . "\n";
         print $stream_file '        output_interval="stream:restart:output_interval">' . "\n";
         print $stream_file '</stream>' . "\n";
         print $stream_file '' . "\n";
@@ -747,6 +747,7 @@ if ( -e "$CASEROOT/SourceMods/src.mpaso/$STREAM_NAME" ) {
         print $stream_file '        filename_interval="output_interval"' . "\n";
         print $stream_file '        clobber_mode="truncate"' . "\n";
         print $stream_file '        input_interval="initial_only"' . "\n";
+        print $stream_file '        packages="timeSeriesStatsMonthlyAMPKG"' . "\n";
         print $stream_file '        output_interval="stream:restart:output_interval">' . "\n";
         print $stream_file '</stream>' . "\n";
         print $stream_file '' . "\n";
@@ -756,6 +757,7 @@ if ( -e "$CASEROOT/SourceMods/src.mpaso/$STREAM_NAME" ) {
         print $stream_file '        filename_interval="output_interval"' . "\n";
         print $stream_file '        clobber_mode="truncate"' . "\n";
         print $stream_file '        input_interval="initial_only"' . "\n";
+        print $stream_file '        packages="timeSeriesStatsClimatologyAMPKG"' . "\n";
         print $stream_file '        output_interval="stream:restart:output_interval">' . "\n";
         print $stream_file '</stream>' . "\n";
         print $stream_file '' . "\n";
@@ -765,6 +767,7 @@ if ( -e "$CASEROOT/SourceMods/src.mpaso/$STREAM_NAME" ) {
 	print $stream_file '        filename_interval="output_interval"' . "\n";
 	print $stream_file '        clobber_mode="truncate"' . "\n";
 	print $stream_file '        input_interval="initial_only"' . "\n";
+	print $stream_file '        packages="timeSeriesStatsCustomAMPKG"' . "\n";
 	print $stream_file '        output_interval="stream:restart:output_interval">' . "\n";
 	print $stream_file '</stream>' . "\n";
 	print $stream_file '' . "\n";