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So, this happens when there are multiple entries with the same kanji and kana readings (though they may be completely separate words and bear different meanings).
I'm going to have to delete the duplicates (take only the first entry) to handle this case, because there is no point in having both and it may cause errors in processing tools.
I was doing some processing and noticed this:
Eighty lines in the input are duplicates. Easy enough to address on my end but it might mean something to you?
Edit: In case it's helpful, here they are (kanji headword & reading):
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