fix: internal links were using full url (#117)

user-guide/docs/managingdata/datatransfer.md

@@ -286,7 +286,7 @@ Set "Server" to "data.tacc.utexas.edu".
 
 Enter your DesignSafe/TACC username and password.
 
-For the "Path", refer to <a href="https://www.designsafe-ci.org/user-guide/managingdata/#setting-path-to-ds-on-corral" target="_blank">Setting Path to DS on Corral</a>.
+For the "Path", refer to <a href="/user-guide/managingdata/settingpathtodesignsafe" target="_blank">Setting Path to DS on Corral</a>.
 
 If you do not see the "Path" option click the button "More Options" in the lower left.
 
@@ -326,7 +326,7 @@ A data transfer can be performed using the secure copy (scp) utility between any
 
 A file can be copied from your local system to the remote server by using the command:
 
-where **&lt;filename&gt;** is the name of the file you wish to copy, **&lt;username&gt;** is your DesignSafe/TACC username, and **&lt;/path/to/directory&gt;** is the path on Corral where you wish to send the copy of your file. For the "Path", refer to <a href="https://www.designsafe-ci.org/user-guide/managingdata/#setting-path-to-ds-on-corral" target="_blank">Setting Path to DS on Corral</a>.
+where **&lt;filename&gt;** is the name of the file you wish to copy, **&lt;username&gt;** is your DesignSafe/TACC username, and **&lt;/path/to/directory&gt;** is the path on Corral where you wish to send the copy of your file. For the "Path", refer to <a href="/user-guide/managingdata/settingpathtodesignsafe" target="_blank">Setting Path to DS on Corral</a>.
 
 An entire folder can be copied from your local system to the remote server by using the command:
 
@@ -350,7 +350,7 @@ A file can be synced from your local system to the remote server by using the co
 
 	<em><strong>rsync &lt;filename&gt; &lt;username&gt;@data.tacc.utexas.edu:&lt;/path/to/project/directory/&gt;</strong></em>
 
-where <em><strong>&lt;filename&gt;</strong></em> is the name of the file you wish to copy, <em><strong>&lt;username&gt;</strong></em> is your DesignSafe/TACC username, and <em><strong>&lt;/path/to/directory/&gt;</strong></em> is the path on Corral where you wish to send the copy of your file. For the "Path", refer to <a href="https://www.designsafe-ci.org/user-guide/managingdata/#setting-path-to-ds-on-corral" target="_blank">Setting Path to DS on Corral</a>.
+where <em><strong>&lt;filename&gt;</strong></em> is the name of the file you wish to copy, <em><strong>&lt;username&gt;</strong></em> is your DesignSafe/TACC username, and <em><strong>&lt;/path/to/directory/&gt;</strong></em> is the path on Corral where you wish to send the copy of your file. For the "Path", refer to <a href="/user-guide/managingdata/settingpathtodesignsafe" target="_blank">Setting Path to DS on Corral</a>.
 
 An entire directory can be synced from your local system to the remote server by using the command:
 

user-guide/docs/tools/advanced/dsfaq.md

@@ -63,7 +63,7 @@ A: Webinars are recorded and made available on our <a href="https://www.youtube.
 ## Data Depot { #faq-datadepot }
 
 <strong>Q: What data can I upload to the Data Depot?</strong><br>
-A: There are no restrictions on file types for the data that you upload to the Data Depot. We do have special handling procedures for <a href="https://www.designsafe-ci.org/user-guide/curating/#protectedddr" target="_blank">Managing Protected Data</a> such as regulated/secure/PHI/PII/IRB/human-subjects data, so do not upload these data types directly into the Data Depot. All other types of data that you need to perform your research is welcomed and encouraged! 
+A: There are no restrictions on file types for the data that you upload to the Data Depot. We do have special handling procedures for <a href="/user-guide/curating/bestpractices/#protecteddata" target="_blank">Managing Protected Data</a> such as regulated/secure/PHI/PII/IRB/human-subjects data, so do not upload these data types directly into the Data Depot. All other types of data that you need to perform your research is welcomed and encouraged! 
 
 
 <strong>Q: How can I transfer data to/from my computer and the Data Depot?</strong><br>
@@ -85,7 +85,7 @@ A: The Published directory in the Data Depot holds the <a href="https://www.desi
 ## Tools & Applications { #faq-workspace }
 
 <strong>Q: I don't see the application I need in the Tools & Applications. How can I use my application?</strong><br>
-A: There are a couple of different approaches that can be taken. If this is an open source application that is used by many researchers throughout this research community, then we can work with you to determine if it is a candidate to be added to the Tools & Applications in the portal. <a href="https://www.designsafe-ci.org/help/submit-ticket/" target="_blank">Please submit a ticket</a> to start the conversation. Another approach is that you could <a href="https://www.designsafe-ci.org/user-guide/tools/advanced/hpcallocations" target="_blank">request an allocation</a> on one of TACC's HPC resources, and then you would log directly into the HPC system to run your application. 
+A: There are a couple of different approaches that can be taken. If this is an open source application that is used by many researchers throughout this research community, then we can work with you to determine if it is a candidate to be added to the Tools & Applications in the portal. <a href="https://www.designsafe-ci.org/help/new-ticket/" target="_blank">Please submit a ticket</a> to start the conversation. Another approach is that you could <a href="/user-guide/tools/advanced/hpcallocations" target="_blank">request an allocation</a> on one of TACC's HPC resources, and then you would log directly into the HPC system to run your application. 
 
 <hr>
 ## MATLAB { #faq-matlab }

user-guide/docs/tools/advanced/hpcallocations.md

@@ -6,7 +6,7 @@ The following are the policies governing allocations for compute time and storag
 
 ## Who is eligible for an Account { #account }
 
-DesignSafe is broadly available to any researcher or practitioner working in <em>open</em> Natural Hazards Engineering and Social Science research. By “<em>open</em>,” the expectation is that any research performed on DesignSafe is unclassified, and will result in publication in a broadly available journal or conference. We also strongly encourage you to <a href="https://www.designsafe-ci.org/user-guide/curating/" target="_blank">publish your datasets</a> in our CoreTrustSeal certified data repository.
+DesignSafe is broadly available to any researcher or practitioner working in <em>open</em> Natural Hazards Engineering and Social Science research. By “<em>open</em>,” the expectation is that any research performed on DesignSafe is unclassified, and will result in publication in a broadly available journal or conference. We also strongly encourage you to <a href="/user-guide/curating/guides/" target="_blank">publish your datasets</a> in our CoreTrustSeal certified data repository.
 
 ## Who is eligible for Allocations { #allocation }
 

user-guide/docs/tools/simulation/in-core.md

@@ -25,7 +25,7 @@ The user can install pyincore using any of these two options:
 1) the [temporary user installation](#Title1.1) 
 2) creating a [specific kernel for pyincore](#Title1.2)
 
-While option 1 may be faster, option 2 corresponds to the formal (recommended) approach for installing the IN-CORE Python packages. Additionally, some related packages to pyincore, e.g. pyincore-viz, may present installation conflicts when using the temporary option (option 1). For more information about installing Python libraries on DesignSafe-CI, refer to [Installing Packages](https://www.designsafe-ci.org/user-guide/tools/jupyterhub/#installing).
+While option 1 may be faster, option 2 corresponds to the formal (recommended) approach for installing the IN-CORE Python packages. Additionally, some related packages to pyincore, e.g. pyincore-viz, may present installation conflicts when using the temporary option (option 1). For more information about installing Python libraries on DesignSafe-CI, refer to [Installing Packages](/user-guide/tools/jupyterhub/#installing).
 
 To start, access DesignSafe JupyterHub via the DesignSafe-CI. Select "Tools & Applications" > "Analysis" > "Jupyter". When asked to select a notebook image, select the “Updated Jupyter Image” and click “Start My Server”.
 ![Figure 1. Access to the JupyterHub on DesignSafe-CI](./imgs/in-core-1.png)

user-guide/docs/tools/simulation/lsdyna.md

@@ -110,7 +110,7 @@ Examples in this guide:
 * Follow the Job Status by clicking on <i>Job Status</i> on the left tab.
 * When the analysis is completed two options available:
 	* Launching LS-PrePost again to visualize/extract results;
-	* [Transfer output files via Globus.](https://www.designsafe-ci.org/user-guide/managingdata/datatransfer/#globus){target="_blank"}
+	* [Transfer output files via Globus.](/user-guide/managingdata/datatransfer/#globus){target="_blank"}
 
 #### Launching a single job via Command Line Interface (CLI) { #launch-singlecli }
 

user-guide/docs/tools/simulation/opensees/openseesDesignSafeQuickStart.md

@@ -34,7 +34,7 @@ This **WebPortal** provides direct access to all OpenSees applications on Design
 
 Use this WebPortal in one of the these three ways, listed here in order of scalability:
 
-1. Select [**"Interactive VM for OpenSees"**](https://www.designsafe-ci.org/user-guide/tools/simulation/opensees/openseesExpress/){:target="_blank"} to run OpenSees, OpenSeesMP, and OpenSeesSP for both Tcl and Python interpreters, at the terminal prompt for real-time interactivity with your model. Here you can edit and test your script in an integrated environment before submitting the full job to the HPC system. (<small><font color="blue"><button style="background: none!important;border: none;padding: 0!important;font-family: arial, sans-serif;color: #069;text-decoration: none;cursor: pointer;" onclick='toggleDiv("OSinter_deets")'>specs</button></font></small>)
+1. Select [**"Interactive VM for OpenSees"**](/user-guide/tools/simulation/opensees/opensees/#opensees-express){:target="_blank"} to run OpenSees, OpenSeesMP, and OpenSeesSP for both Tcl and Python interpreters, at the terminal prompt for real-time interactivity with your model. Here you can edit and test your script in an integrated environment before submitting the full job to the HPC system. (<small><font color="blue"><button style="background: none!important;border: none;padding: 0!important;font-family: arial, sans-serif;color: #069;text-decoration: none;cursor: pointer;" onclick='toggleDiv("OSinter_deets")'>specs</button></font></small>)
 
     <div id="OSinter_deets" hidden>
 
@@ -47,7 +47,7 @@ Use this WebPortal in one of the these three ways, listed here in order of scala
 
     </div>
 
-2. Submit your sequential [**OpenSees-Express**](https://www.designsafe-ci.org/user-guide/tools/simulation/opensees/openseesExpress/){:target="_blank"} job directly to a dedicated Virtual Machine (VM) and your TCL script will be uploaded and run immediately. (<small><font color="blue"><button style="background: none!important;border: none;padding: 0!important;font-family: arial, sans-serif;color: #069;text-decoration: none;cursor: pointer;" onclick='toggleDiv("OSexprees_deets")'>specs</button></font></small>)
+2. Submit your sequential [**OpenSees-Express**](/user-guide/tools/simulation/opensees/opensees/#opensees-express){:target="_blank"} job directly to a dedicated Virtual Machine (VM) and your TCL script will be uploaded and run immediately. (<small><font color="blue"><button style="background: none!important;border: none;padding: 0!important;font-family: arial, sans-serif;color: #069;text-decoration: none;cursor: pointer;" onclick='toggleDiv("OSexprees_deets")'>specs</button></font></small>)
 
     <div id="OSexprees_deets" hidden>
 
@@ -61,7 +61,7 @@ Use this WebPortal in one of the these three ways, listed here in order of scala
 
     </div>
 
-3. Submit your parallel [**OpenSeesSP**](https://www.designsafe-ci.org/user-guide/tools/simulation/opensees/openseesSP/){:target="_blank"} or [**OpenSeesMP**](https://www.designsafe-ci.org/user-guide/tools/simulation/opensees/openseesMP/){:target="_blank"} job directly to the HPC and your TCL script will be uploaded and submitted to the small queue on [**Frontera**](https://frontera-portal.tacc.utexas.edu/user-guide/running/){:target="_blank"}. (<small><font color="blue"><button style="background: none!important;border: none;padding: 0!important;font-family: arial, sans-serif;color: #069;text-decoration: none;cursor: pointer;" onclick='toggleDiv("OSmpsp_deets")'>specs</button></font></small>)
+3. Submit your parallel [**OpenSeesSP**](/user-guide/tools/simulation/opensees/opensees/#openseesmp){:target="_blank"} or [**OpenSeesMP**](/user-guide/tools/simulation/opensees/openseesMP/){:target="_blank"} job directly to the HPC and your TCL script will be uploaded and submitted to the small queue on [**Frontera**](https://frontera-portal.tacc.utexas.edu/user-guide/running/){:target="_blank"}. (<small><font color="blue"><button style="background: none!important;border: none;padding: 0!important;font-family: arial, sans-serif;color: #069;text-decoration: none;cursor: pointer;" onclick='toggleDiv("OSmpsp_deets")'>specs</button></font></small>)
 
     <div id="OSmpsp_deets" hidden>
 
@@ -86,7 +86,7 @@ Use this WebPortal in one of the these three ways, listed here in order of scala
 
 #### Instructions
 
-1. Determine the appropriate application for your task. Refer to the [DesignSafe User Guide](https://www.designsafe-ci.org/user-guide/tools/simulation/opensees/openseesOverview/){:target="_blank"} for detailed help.
+1. Determine the appropriate application for your task. Refer to the [DesignSafe User Guide](/user-guide/tools/simulation/opensees/opensees/#opensees-applications_1){:target="_blank"} for detailed help.
 2. <u>Select your application</u> from the pull-down menu.
 3. Fill-out the application-specific input form that gets generated (not all applications require all the input):
     - **Input Directory**: Directory containing all input files. This directory will be cloned to the HPC workspace and, once the job is complete, will be placed in the output location you specify below. <br> You can drag the link for the directory from the Data Browser on the left, or click the 'Select Input' button and then select the directory.

user-guide/docs/usecases/README.md

@@ -1,6 +1,6 @@
 # DesignSafe Use Cases
 
-How to contribute to [DesignSafe Use Cases](https://www.designsafe-ci.org/user-guide/usecases/overview/).
+How to contribute to [DesignSafe Use Cases](https://designsafe-ci.org/user-guide/usecases/overview/).
 
 ## A Guide to Adding Your Use Case Project