Upgrade to JupyterBook 2.0 with MyST

[tsnow03]

Upgrading to JupyterBook 2.0a so we have the added MyST features. This JupyterBook builds on my local computer and the environment is good to go. It won't build here yet though. I also think some features are missing at the moment because I'm not sure if I've gotten all of the important features into it from the old jupyterbook _config.yml file or if they aren't available yet in the v2.0.0a0 version. Small changes will need to be made to the notebooks and md files, which I haven't done yet.

To Do:

• Fix the build: scripts/build_resources.sh is using an outdated version of JupyterBook? may also need to update .github/actions/buildresources
• Ensure all old _config.yml configurations are added to the new myst.yml if it is possible
• Check and update all markdown and notebooks if anything is broken
• [Optional] Can we get the toc into myst.yml? I wasn't able to get it to work so it currently functions using _toc.yml, but the draft I've created is in there
• [Optional] Do we need all of the myst libraries that have been added into this environment.yml? What I have may be overkill, but I know we need mystmd.

[github-actions]

👈 Launch a binder notebook on this branch

[tsnow03]

Useful resources
JupyterBook 2.0a realease blog: https://blog.jupyterbook.org/posts/2024-11-15-jupyter-book-2-alpha
example full scale jupyterbook repo: https://github.com/jupyter-book/mystmd/blob/main/docs/myst.yml
JupyterBook documentation: https://next.jupyterbook.org/tutorial/website