Squashed 'thirdParty/mallocMC/' content from commit c63b20ba73

git-subtree-dir: thirdParty/mallocMC git-subtree-split: c63b20ba7388d5d0857259cb992179b01990db24
ComputationalRadiationPhysics · Feb 20, 2025 · 6d77d8c · 6d77d8c
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diff --git a/.clang-format b/.clang-format
@@ -0,0 +1,165 @@
+# General options
+Language: Cpp
+Standard: c++20
+DisableFormat: false
+AccessModifierOffset: -4
+AlignAfterOpenBracket: AlwaysBreak
+AlignArrayOfStructures: None
+AlignConsecutiveAssignments: false
+AlignConsecutiveBitFields: false
+AlignConsecutiveDeclarations: false
+AlignConsecutiveMacros: false
+AlignEscapedNewlines: Right
+AlignOperands: Align
+AlignTrailingComments:
+  Kind: Never
+AllowAllArgumentsOnNextLine: false
+AllowAllParametersOfDeclarationOnNextLine: false
+AllowShortBlocksOnASingleLine: Never
+AllowShortCaseLabelsOnASingleLine: false
+AllowShortEnumsOnASingleLine: false
+AllowShortFunctionsOnASingleLine: None
+AllowShortIfStatementsOnASingleLine: Never
+AllowShortLambdasOnASingleLine: All
+AllowShortLoopsOnASingleLine: false
+AlwaysBreakAfterReturnType: None
+AlwaysBreakBeforeMultilineStrings: false
+AlwaysBreakTemplateDeclarations: Yes
+BinPackArguments: false
+BinPackParameters: false
+BitFieldColonSpacing: Both
+BreakAfterAttributes: Never
+BreakBeforeBinaryOperators: All
+BreakBeforeBraces: Allman
+BreakBeforeConceptDeclarations: Always
+BreakBeforeInlineASMColon: OnlyMultiline
+BreakBeforeTernaryOperators: true
+BreakConstructorInitializers: BeforeComma
+BreakInheritanceList: BeforeComma
+BreakStringLiterals: true
+ColumnLimit: 119
+CommentPragmas: '^ COMMENT pragma:'
+CompactNamespaces: false
+ConstructorInitializerIndentWidth: 4
+ContinuationIndentWidth: 4
+Cpp11BracedListStyle: true
+DerivePointerAlignment: false
+EmptyLineAfterAccessModifier: Never
+EmptyLineBeforeAccessModifier: Always
+ExperimentalAutoDetectBinPacking: false
+FixNamespaceComments: true
+IncludeBlocks: Regroup
+IncludeIsMainRegex: '(Test)?$'
+IncludeIsMainSourceRegex: ''
+IndentAccessModifiers: false
+IndentCaseBlocks: true
+IndentCaseLabels: false
+IndentExternBlock: AfterExternBlock
+IndentGotoLabels: true
+IndentPPDirectives: AfterHash
+IndentRequiresClause: false
+IndentWidth: 4
+IndentWrappedFunctionNames: false
+InsertBraces: false
+InsertNewlineAtEOF: true
+IntegerLiteralSeparator:
+  Binary: 4
+  Decimal: 3
+  DecimalMinDigits: 7
+  Hex: 4
+KeepEmptyLinesAtTheStartOfBlocks: false
+LambdaBodyIndentation: Signature
+LineEnding: DeriveLF
+MacroBlockBegin: ''
+MacroBlockEnd: ''
+MaxEmptyLinesToKeep: 2
+NamespaceIndentation: All
+PackConstructorInitializers: CurrentLine
+PenaltyBreakAssignment: 2
+PenaltyBreakBeforeFirstCallParameter: 19
+PenaltyBreakComment: 300
+PenaltyBreakFirstLessLess: 120
+PenaltyBreakOpenParenthesis: 0 # default made explicit here
+PenaltyBreakString: 1000
+PenaltyBreakTemplateDeclaration: 10
+PenaltyExcessCharacter: 1000000
+PenaltyIndentedWhitespace: 0 # default made explicit here
+PenaltyReturnTypeOnItsOwnLine: 1000
+PointerAlignment: Left
+PPIndentWidth: -1 # follow IndentWidth
+QualifierAlignment: Custom
+QualifierOrder: ['friend', 'static', 'inline', 'constexpr', 'type', 'const', 'volatile', 'restrict']
+ReferenceAlignment: Pointer # follow PointerAlignment
+ReflowComments: true
+RemoveBracesLLVM: false
+RemoveSemicolon: false
+RequiresClausePosition: WithPreceding
+RequiresExpressionIndentation: OuterScope
+ShortNamespaceLines: 0
+SortIncludes: true
+SortUsingDeclarations: Lexicographic
+SeparateDefinitionBlocks: Always
+SpaceAfterCStyleCast: true
+SpaceAfterLogicalNot: false
+SpaceAfterTemplateKeyword: false
+SpaceAroundPointerQualifiers: Default # follow PointerAlignment
+SpaceBeforeAssignmentOperators: true
+SpaceBeforeCaseColon: false
+SpaceBeforeCpp11BracedList: false
+SpaceBeforeCtorInitializerColon: true
+SpaceBeforeInheritanceColon: true
+SpaceBeforeParens: Never
+SpaceBeforeRangeBasedForLoopColon: true
+SpaceBeforeSquareBrackets: false
+SpaceInEmptyBlock: false
+SpaceInEmptyParentheses: false
+SpacesBeforeTrailingComments: 1
+SpacesInAngles: false
+SpacesInConditionalStatement: false
+SpacesInContainerLiterals: false
+SpacesInCStyleCastParentheses: false
+SpacesInLineCommentPrefix:
+  Minimum: 1
+  Maximum: -1
+SpacesInParentheses: false
+SpacesInSquareBrackets: false
+TabWidth: 4
+UseCRLF: false
+UseTab: Never
+# Project specific options
+#AttributeMacros: []
+#ForEachMacros: []
+#IfMacros: []
+IncludeCategories:
+  # Local headers (in "") above all else
+  - Regex: '"([A-Za-z0-9.\/-_])+"'
+    Priority: 1
+  # "alpaka/foo.hpp" after local headers (occur inside alpaka)
+  - Regex: '"alpaka/([A-Za-z0-9.\/-_])+"'
+    Priority: 2
+  # <alpaka/foo.hpp> after local headers (occur outside alpaka in examples and test)
+  - Regex: '<alpaka/([A-Za-z0-9.\/-_])+>'
+    Priority: 3
+  # C++ standard library headers are the last group to be included
+  - Regex: '<([A-Za-z0-9\/-_])+>'
+    Priority: 5
+  # Includes that made it this far are third-party headers and will be placed
+  # below alpaka's includes
+  - Regex: '<([A-Za-z0-9.\/-_])+>'
+    Priority: 4
+# Macros: []
+# NamespaceMacros: []
+StatementAttributeLikeMacros:
+  - 'ALPAKA_DEVICE_VOLATILE'
+  - 'ALPAKA_FN_ACC'
+  - 'ALPAKA_FN_EXTERN'
+  - 'ALPAKA_FN_HOST'
+  - 'ALPAKA_FN_HOST_ACC'
+  - 'ALPAKA_FN_INLINE'
+  - 'ALPAKA_STATIC_ACC_MEM_CONSTANT'
+  - 'ALPAKA_STATIC_ACC_MEM_GLOBAL'
+  - 'ALPAKA_UNROLL'
+  - 'ALPAKA_VECTORIZE_HINT'
+#StatementMacros: []
+#TypenameMacros: []
+#WhitespaceSensitiveMacros: []
diff --git a/.clang-tidy b/.clang-tidy
@@ -0,0 +1,13 @@
+Checks: |
+  *,
+  -*-avoid-c-arrays,
+  -altera*,
+  -*avoid-do-while,
+  -*constant-array-index,
+  -*pointer*arithmetic*,
+  -llvmlibc*,
+  -llvm-header-guard,
+  -fuchsia*,
+  -misc-non-private-member-variables-in-classes,
+  -cppcoreguidelines-pro-type-reinterpret-cast
+HeaderFilterRegex: ".*"
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -0,0 +1,46 @@
+name: Continuous Integration
+on: [push, pull_request]
+env:
+  CPM_SOURCE_CACHE: ${{ github.workspace }}/cpm_modules
+  CTEST_OUTPUT_ON_FAILURE: 1
+  SKIP: no-commit-to-branch
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
+        with:
+          python-version: 3.x
+      - uses: pre-commit/action@v3.0.1
+      - uses: pre-commit-ci/lite-action@v1.0.2
+        if: always()
+  cpu-tests:
+    # This action only runs on various CPU backends.
+    # As such, this is not a fully-fletched production-like test.
+    # Hopefully, it will still save us from a few stupid mistakes.
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/cache@v3
+        with:
+          path: "**/cpm_modules"
+          key: ${{ github.workflow }}-cpm-modules-${{ hashFiles('**/CMakeLists.txt', '**/*.cmake') }}
+      - run: sudo apt update && sudo apt install libboost-all-dev
+      - run: |
+          cmake -S. -Bbuild \
+          -Dalpaka_ACC_CPU_B_OMP2_T_SEQ_ENABLE:BOOL=ON \
+          -Dalpaka_ACC_CPU_B_SEQ_T_OMP2_ENABLE:BOOL=ON \
+          -Dalpaka_ACC_CPU_B_SEQ_T_SEQ_ENABLE:BOOL=ON \
+          -Dalpaka_ACC_CPU_B_SEQ_T_THREADS_ENABLE:BOOL=ON \
+          -DmallocMC_BUILD_TESTING:BOOL=ON \
+          -DmallocMC_BUILD_EXAMPLES:BOOL=ON
+      - working-directory: build
+        run: cmake --build . -j
+      - working-directory: build
+        run: ctest
+      - working-directory: build
+        run: |
+          for example in examples/[^C]*/mallocMCExample*; do
+            ./${example}
+          done
diff --git a/.gitignore b/.gitignore
@@ -0,0 +1,37 @@
+# tmp files
+*~
+
+# Compiled Object files
+*.slo
+*.lo
+*.o
+/build
+
+# Compiled Dynamic libraries
+*.so
+*.dylib
+
+# Compiled Static libraries
+*.lai
+*.la
+*.a
+
+# netbeans project files
+/nbproject/
+
+# Code::Blocks project files
+/*.cbp
+/*.layout
+
+# Visual Studio Code configuration files
+.vscode
+.vs
+
+# JetBrains project files
+.idea/
+
+# original backup files
+*.orig
+
+.cache
+compile_commands.json
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -0,0 +1,40 @@
+minimum_pre_commit_version: 3.2.0 # necessitated by Lucas-C's hooks
+default_install_hook_types: [pre-commit, pre-push]
+repos:
+  - repo: https://github.com/pre-commit/mirrors-clang-format
+    rev: v19.1.7
+    hooks:
+      - id: clang-format
+        files: \.(cpp|hpp)
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+      - id: no-commit-to-branch
+        args: [-b, dev]
+      - id: check-merge-conflict
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-toml
+      - id: check-yaml
+        args: ["--allow-multiple-documents"]
+      - id: mixed-line-ending
+      - id: check-executables-have-shebangs
+      - id: check-shebang-scripts-are-executable
+  - repo: https://github.com/Lucas-C/pre-commit-hooks
+    rev: v1.5.5
+    hooks:
+      - id: forbid-tabs
+      - id: remove-tabs
+      - id: forbid-crlf
+      - id: remove-crlf
+  - repo: meta
+    hooks:
+      - id: check-useless-excludes
+  - repo: https://github.com/google/yamlfmt
+    rev: v0.15.0
+    hooks:
+      - id: yamlfmt
+  - repo: https://github.com/adrienverge/yamllint
+    rev: v1.35.1
+    hooks:
+      - id: yamllint
diff --git a/.yamllint b/.yamllint
@@ -0,0 +1,6 @@
+extends: default
+rules:
+  document-start: disable
+  truthy: disable
+  comments: disable
+  line-length: disable
diff --git a/.zenodo.json b/.zenodo.json
@@ -0,0 +1,64 @@
+{
+  "title": "mallocMC - Memory Allocator for Many Core Architectures",
+  "description": "This project provides a framework for fast memory managers on many core accelerators. It is based on alpaka to run on many different accelerators and implements multiple algorithms.",
+  "keywords": [
+    "mallocMC",
+    "CUDA",
+    "manycore",
+    "GPU",
+    "allocator"
+  ],
+  "language": "eng",
+  "access_right": "open",
+  "license": {
+    "id": "MIT"
+  },
+  "creators": [
+    {
+      "name": "Widera, René",
+      "affiliation": "Helmholtz-Zentrum Dresden-Rossendorf",
+      "orcid": "0000-0003-1642-0459"
+    },
+    {
+      "name": "Lenz, Julian",
+      "affiliation": "CASUS, Helmholtz-Zentrum Dresden-Rossendorf",
+      "orcid": "0000-0001-5250-0005"
+    }
+  ],
+  "contributors": [
+    {
+      "name": "Eckert, Carlchristian",
+      "affiliation": "Helmholtz-Zentrum Dresden-Rossendorf, TU Dresden",
+      "orcid": "0000-0002-6459-0842",
+      "type": "Other"
+    },
+    {
+      "name": "Worpitz, Benjamin",
+      "type": "Other"
+    },
+    {
+      "name": "Grund, Alexander",
+      "affiliation": "Helmholtz-Zentrum Dresden-Rossendorf",
+      "orcid": "0000-0002-7196-8452",
+      "type": "Other"
+    },
+    {
+      "name": "Huebl, Axel",
+      "affiliation": "Helmholtz-Zentrum Dresden-Rossendorf",
+      "orcid": "0000-0003-1943-7141",
+      "type": "Other"
+    },
+    {
+      "name": "Gruber, Bernhard Manfred",
+      "affiliation": "Helmholtz-Zentrum Dresden-Rossendorf, CASUS, CERN",
+      "orcid": "0000-0001-7848-1690",
+      "type": "Other"
+    },
+    {
+      "name": "Bastrakov, Sergei",
+      "affiliation": "Helmholtz-Zentrum Dresden-Rossendorf",
+      "orcid": "0000-0003-3396-6154",
+      "type": "Other"
+    }
+  ]
+}