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Fatemeh committed Sep 27, 2024
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Expand Up @@ -130,6 +130,7 @@ <h1 id="references">References</h1>
<li><a href="https://www.hhs.gov/hipaa/for-professionals/compliance-enforcement/index.html" target="_blank">HIPAA</a> (Health Insurance Portability &amp; Accountability Act)</li>
<li>Tarr, M. J. (1996). The Object Databank. Carnegie Mellon University, <a href="https://sites.google.com/andrew.cmu.edu/tarrlab/stimuli?authuser=0" target="_blank">Tarr Lab page</a>, <a href="https://drive.google.com/file/d/1_2H7byO2xSXTOOCZP4zDIHbMPTs5XIx3/view" target="_blank">Databank direct link</a>.</li>
<li>Willenbockel, V., Sadr, J., Fiset, D., Horne, G. O., Gosselin, F., &amp; Tanaka, J. W. (2010). Controlling low-level image properties: the SHINE toolbox. Behavior Research Methods, 42(3), 671-684. <a href="https://doi.org/10.3758/BRM.42.3.671" target="_blank">https://doi.org/10.3758/BRM.42.3.671</a></li>
<li>Glover, G. H. (1999). Deconvolution of impulse response in event-related BOLD fMRI1. Neuroimage, 9(4), 416-429. https://doi.org/10.1006/nimg.1998.0419</li>
<li>Pelli, D. G. (1997). The VideoToolbox software for visual psychophysics: transforming numbers into movies. Spatial vision, 10(4), 437-442. <a href="https://doi.org/10.1163/156856897x00366" target="_blank">https://doi.org/10.1163/156856897x00366</a></li>
<li>Dale, A. M., Fischl, B., &amp; Sereno, M. I. (1999). Cortical surface-based analysis: I. Segmentation and surface reconstruction. Neuroimage, 9(2), 179-194. <a href="https://doi.org/10.1006/nimg.1998.0395" target="_blank">https://doi.org/10.1006/nimg.1998.0395</a></li>
<li>Jenkinson, M., &amp; Smith, S. (2001). A global optimisation method for robust affine registration of brain images. Medical image analysis, 5(2), 143-156. <a href="https://doi.org/10.1016/S1361-8415(01)00036-6" target="_blank">https://doi.org/10.1016/S1361-8415(01)00036-6</a></li>
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<li>Yang, A. I., Wang, X., Doyle, W. K., Halgren, E., Carlson, C., Belcher, T. L., ... &amp; Thesen, T. (2012). Localization of dense intracranial electrode arrays using magnetic resonance imaging. Neuroimage, 63(1), 157-165. <a href="https://doi.org/10.1016/j.neuroimage.2012.06.039" target="_blank">https://doi.org/10.1016/j.neuroimage.2012.06.039</a></li>
<li>Groppe, D. M., Bickel, S., Dykstra, A. R., Wang, X., Mégevand, P., Mercier, M. R., ... &amp; Honey, C. J. (2017). iELVis: An open source MATLAB toolbox for localizing and visualizing human intracranial electrode data. Journal of neuroscience methods, 281, 40-48. <a href="https://doi.org/10.1016/j.jneumeth.2017.01.022" target="_blank">https://doi.org/10.1016/j.jneumeth.2017.01.022</a></li>
<li>Ashburner, J. (2007). A fast diffeomorphic image registration algorithm. Neuroimage, 38(1), 95-113. <a href="https://doi.org/10.1016/j.neuroimage.2007.07.007" target="_blank">https://doi.org/10.1016/j.neuroimage.2007.07.007</a></li>
<li>Esteban, O., Birman, D., Schaer, M., Koyejo, O. O., Poldrack, R. A., &amp; Gorgolewski, K. J. (2017). MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites. PLoS ONE, 12(9), 1–21. https://doi.org/10.1371/journal.pone.0184661</li>
<li>Esteban, O., Ciric, R., Finc, K., Blair, R. W., Markiewicz, C. J., Moodie, C. A., Kent, J. D., Goncalves, M., DuPre, E., Gomez, D. E. P., Ye, Z., Salo, T., Valabregue, R., Amlien, I. K.,Liem, F., Jacoby, N., Stojić, H., Cieslak, M., Urchs, S., Halchenko, Y. O., … Gorgolewski, K. J. (2020). Analysis of task-based functional MRI data preprocessed with fMRIPrep. Nature Protocols, 15(7), 2186–2202. https://doi.org/10.1038/s41596-020-0327-3</li>
<li>Power, J. D., Mitra, A., Laumann, T. O., Snyder, A. Z., Schlaggar, B. L. &amp; Petersen, S. E. (2014). Methods to detect, characterize, and remove motion artifact in resting state fMRI. Neuroimage. Jan 1;84:320-41. https://doi.org/10.1016/j.neuroimage.2013.08.048</li>
<li>Li, X., Morgan, P. S., Ashburner, J., Smith, J., &amp; Rorden, C. (2016). The first step for neuroimaging data analysis: DICOM to NIfTI conversion. Journal of neuroscience methods, 264, 47-56. <a href="https://doi.org/10.1016/j.jneumeth.2016.03.001" target="_blank">https://doi.org/10.1016/j.jneumeth.2016.03.001</a></li>
<li>Omer Faruk Gulban, Dylan Nielson, john lee, Russ Poldrack, Chris Gorgolewski, Vanessasaurus, &amp; Chris Markiewicz. (2022). poldracklab/pydeface: PyDeface v2.0.2 (v2.0.2). Zenodo. <a href="https://doi.org/10.5281/zenodo.6856482" target="_blank">https://doi.org/10.5281/zenodo.6856482</a></li>
<li><a href="https://wiki.xnat.org/documentation/" target="_blank">https://wiki.xnat.org/documentation/</a></li>
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Expand Up @@ -199,5 +199,5 @@ <h1 id="welcome-to-the-cogitate-data-release-documentation">Welcome to the Cogit

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