Skip to content
@ClavelLab

The Clavel lab

This is the official GitHub account for the research group of Prof. Thomas Clavel.

Pinned Loading

  1. MiMiC Public

    Minimal Microbial Consortia creation tools

    R 10 4

  2. Protologger Public

    Forked from thh32/Protologger

    Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

    Python

  3. SCD Public

    Anaerobic Single Cell Dispensing (SCD) for anaerobic cultivation of bacteria from complex samples

  4. maldipickr Public

    Dereplicate And Cherry-pick Mass Spectrometry Spectra

    R 2

Repositories

Showing 10 of 13 repositories
  • github-repo-stats Public

    Statistics aggregation for Github repositories for NFDI4Microbiota KPI

    0 1 0 0 Updated Mar 22, 2025
  • pocpbenchmark Public

    Nextflow workflow for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

    Nextflow 0 MIT 0 0 0 Updated Mar 20, 2025
  • pocpbenchmark_manuscript Public

    Code and manuscript for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

    TeX 0 GPL-3.0 0 0 0 Updated Mar 20, 2025
  • genome-assembly Public

    A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab

    Python 1 MIT 1 0 0 Updated Mar 4, 2025
  • maldipickr Public

    Dereplicate And Cherry-pick Mass Spectrometry Spectra

    R 2 GPL-3.0 0 4 (1 issue needs help) 0 Updated Feb 21, 2025
  • consprot Public

    High-throughput delineation of bacterial genera

    Nextflow 0 0 0 0 Updated Nov 15, 2024
  • template-dereplication-workflow Public

    Workflow template to dereplicate and cherry-pick mass spectrometry spectra

    R 0 GPL-3.0 0 1 0 Updated Nov 14, 2024
  • miBC Public

    The Mouse Intestinal Bacterial Collection

    1 1 0 0 Updated Apr 24, 2024
  • maldipickrGUI Public

    Workflow template to dereplicate and cherry-pick mass spectrometry spectraAn interactive interface to run reproducible workflow to dereplicate and cherry-pick mass spectrometry spectra with the 'maldipickr' package.

    R 1 GPL-3.0 0 0 0 Updated Dec 18, 2023
  • workshop-biometadata-01 Public
    TeX 0 CC-BY-4.0 0 0 0 Updated Nov 27, 2023
View all repositories